Login
Help

TRANSCRIPT CARD

Submit your Data

  1. Transcript 'Phmamm.CG.MTP2014.S2...' > 
  2. Transcript 'KH2012:KH.C7.159.v1....' > 
  3. Transcript 'KH2012:KH.C4.123.v1....' > 
  4. Transcript 'Mooccu.CG.ELv1_2.S58...' > 
  5. Transcript 'Boschl.CG.Botznik201...'

Transcript Model

Transcript Id

Boschl.CG.Botznik2013.chr5.g60244.01.t

Possible name(s)

TNC; TNXB

Gene model

Boschl.CG.Botznik2013.chr5.g60244

Location

chr5 [9,316,308 / 9,318,953]

Sequences

Amino acid sequence

Length: 326

>Boschl.CG.Botznik2013.chr5.g60244.01.p
MIALLLKITSPLILLVSAHSPFKGIVCEQCDQWCINPSEVIAREGRIGKAGPRGRPGPPG
PHGPIGNPGPVGARGVAGAKGALGLRGITNMTEIEQLIERRIESALQSLTITSCRDITRQ
SAISRNRTGGIFEVYLPNRSGKNVYCDTTTDGGEWLVLQRRLIGDENFFRGWNDYVSGFG
DPRNDFWIGLETLHQLTSRSENELRIDLIRNDGVHLYAKYSFFKVGPATDKYRLTVSGYS
GNATNSFEYQHNGKQFSTKDSDNDLNPSKSCANTWKGAWRYNTCNSLYSNLNGLYGASAI
HGVSWFNRDAGIWTYMKFAEMKFRPM

Nucleotide sequence

Length: 981

>Boschl.CG.Botznik2013.chr5.g60244.01.t
CATGATTGCTCTCCTGCTCAAAATAACCTCGCCGCTGATATTGCTAGTGAGCGCTCATTC
CCCGTTCAAAGGCATTGTGTGTGAACAATGCGATCAATGGTGCATAAATCCGTCGGAAGT
CATCGCCAGAGAAGGGAGGATCGGTAAAGCTGGCCCGCGTGGGCGTCCTGGACCCCCTGG
TCCCCATGGACCGATCGGTAACCCTGGTCCAGTAGGAGCTCGGGGAGTCGCCGGAGCGAA
AGGTGCCCTGGGCCTCCGGGGGATAACCAACATGACTGAAATCGAGCAGCTGATAGAAAG
GAGGATTGAATCAGCTCTACAAAGCCTTACGATCACGAGTTGTCGTGACATTACTCGTCA
GTCGGCTATATCACGTAATCGGACCGGGGGAATATTCGAAGTGTATCTACCAAATCGTTC
TGGGAAAAACGTCTATTGTGACACGACGACAGATGGCGGAGAGTGGCTGGTTTTGCAAAG
GCGGTTAATTGGGGATGAAAATTTCTTCAGAGGTTGGAATGATTACGTCAGCGGTTTTGG
AGATCCACGAAACGATTTCTGGATAGGTCTTGAAACTCTCCATCAACTAACGTCGAGGTC
TGAAAATGAGCTGAGAATTGATTTGATCCGGAACGACGGCGTGCATTTGTACGCAAAATA
CAGCTTCTTCAAAGTCGGTCCAGCAACGGACAAATATCGCTTGACGGTTTCTGGATATTC
CGGCAACGCCACAAACTCATTCGAGTATCAACACAATGGAAAGCAATTCTCCACAAAGGA
CTCCGATAATGACCTGAATCCAAGTAAAAGTTGTGCGAATACATGGAAAGGAGCTTGGCG
GTACAATACTTGTAACAGTCTGTATAGCAACTTGAACGGGTTGTATGGAGCATCTGCAAT
ACACGGAGTATCCTGGTTTAACCGAGATGCAGGCATATGGACCTACATGAAGTTTGCGGA
GATGAAGTTCAGACCAATGTG

InterProScan

Pfam
Collagen (IPR008160) - T[45-87] 3.0E-7
ProSiteProfiles
Fibrinogen_a/b/g_C_dom (IPR002181) - T[105-326] 48.869
SUPERFAMILY
Fibrinogen-like_C (IPR036056) - T[107-326] 3.4E-63
SMART
Fibrinogen_a/b/g_C_dom (IPR002181) - T[109-326] 4.3E-70
CDD
Fibrinogen_a/b/g_C_dom (IPR002181) - T[112-326] 2.45636E-82
Pfam
Fibrinogen_a/b/g_C_dom (IPR002181) - T[125-325] 3.8E-54

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
FCN1_HUMAN 36.842 % 176 1.08E-52
TENA_HUMAN 42.584 % 160 6.34E-44
TENX_HUMAN 45.109 % 156 2.89E-42