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  1. Transcript 'Boschl.CG.Botznik201...'

Transcript Model

Transcript Id

Boschl.CG.Botznik2013.chr5.g60459.01.t

Possible name(s)

AP2B1; AP3D1; COPB1

Gene model

Boschl.CG.Botznik2013.chr5.g60459

Location

chr5 [9,477,799 / 9,484,550]

Sequences

Amino acid sequence

Length: 521

>Boschl.CG.Botznik2013.chr5.g60459.01.p
MTSAESICYTLVNVPSVTDSEPSNETQLKSDIEHGDLRTKTEALKRVILMTLNGEKLHGL
LMTIIKYLLPSDDHTIKKLLLIFWEIWPKTDQDGKLRPEMILVCDAYRKDLQHPNEFIRG
STLRFLCKLRQAELLEPLMPAIRACLDHRHSYVRRNAVLAIYTIYRKFENLIPDAPELIH
EFLEGEKDASCKRNAFMMLIHADQERALDYLSTCIDQVNSFNDILQLVIVELVYKVCHAN
PNERARFIRCIYNLLQSTSPAVRYEAAGTLVTLSNAPTAVKAAAQCYIELIVKEADNNVK
LIVLDRLIDLRDHPTQEKVLQGLVMDILRALSSPDLEVREKTLNLALDLVSSRNVEDLVK
FFEKEISKSSSAQGHDDTDKYRQLLVRSMHQCTIKFPDTSAVVIPVLMEFLSDSDELAAT
DVLIFVREAIQRYTEHKPLILNKLLEIFSSVKNLEIMRGVVWILGEYCEDVEGILRFMDQ
VRKCVGELPIVENELKLAAGEEPEEKQDDKPVKVGFPGAGC

Nucleotide sequence

Length: 1,566

>Boschl.CG.Botznik2013.chr5.g60459.01.t
TATGACGTCGGCTGAGAGCATTTGCTACACGTTGGTCAATGTCCCATCAGTTACCGACTC
GGAGCCATCGAACGAAACGCAATTGAAAAGTGATATTGAGCATGGAGACTTGAGAACCAA
GACTGAAGCTTTAAAGCGTGTTATACTGATGACGTTGAACGGAGAAAAATTGCATGGATT
GTTAATGACGATTATAAAGTATTTGCTGCCCTCTGACGATCACACAATCAAGAAGCTGCT
GCTCATCTTTTGGGAAATATGGCCCAAGACCGATCAGGACGGCAAACTCAGACCGGAAAT
GATTCTCGTCTGCGACGCGTACAGAAAGGATCTGCAACATCCCAATGAATTCATCCGGGG
CTCCACGCTTCGGTTTCTCTGCAAGTTGAGGCAAGCCGAATTGCTGGAACCGCTGATGCC
TGCCATCCGAGCTTGTTTGGATCACAGGCACAGTTATGTGAGAAGAAATGCCGTTCTCGC
TATCTACACCATTTATCGGAAATTTGAGAATCTTATTCCCGACGCTCCGGAACTGATTCA
CGAGTTTCTGGAGGGCGAGAAGGACGCCTCTTGCAAGAGAAATGCTTTTATGATGCTCAT
CCACGCGGATCAGGAAAGAGCTTTGGATTATCTGAGCACCTGCATTGATCAGGTGAACTC
GTTCAACGATATTTTGCAACTTGTCATCGTGGAGCTGGTCTACAAAGTGTGCCACGCGAA
CCCGAACGAACGTGCACGCTTCATTCGTTGCATCTACAATCTGCTGCAATCCACAAGCCC
CGCCGTTCGATATGAAGCCGCCGGCACTTTGGTCACCCTGTCCAACGCGCCTACCGCTGT
AAGAGCCGCTGCGCAATGCTACATTGAGTTGATCGTGAAGGAGGCCGACAACAATGTGAA
GCTCATCGTCCTGGACAGGCTTATCGATCTCCGAGACCACCCAACTCAAGAGAAAGTGCT
TCAGGGACTCGTTATGGATATTTTGAGAGCGTTGTCGTCTCCCGATTTGGAAGTTCGCGA
AAAGACTTTGAACCTGGCACTGGATCTGGTGTCCTCTCGCAACGTCGAAGATTTAGTGAA
ATTCTTCGAGAAGGAGATCTCGAAATCATCAAGCGCCCAAGGTCACGACGACACCGACAA
GTACCGCCAACTGCTGGTGCGGTCCATGCATCAGTGCACCATCAAATTTCCGGACACGTC
AGCCGTTGTCATCCCGGTGTTGATGGAGTTTTTGAGCGATTCCGACGAGCTGGCCGCCAC
GGACGTGCTGATTTTCGTGCGCGAGGCTATCCAACGCTACACCGAGCACAAGCCTCTGAT
TCTGAATAAGCTGCTGGAAATCTTCTCCTCTGTCAAAAACCTAGGGATAATGCGCGGGGT
CGTGTGGATTCTCGGCGAGTATTGCGAGGACGTGGAAGGCATCCTGCGTTTCATGGACCA
GGTGCGGAAATGCGTCGGCGAGCTTCCCATCGTGGAGAACGAGCTGAAACTCGCAGCCGG
GGAGGAGCCCGAGGAGAAGCAGGATGATAAACCGGTCAAGGTTGGTTTTCCTGGGGCTGG
CTGTTA

InterProScan

PANTHER
COPB1 (IPR016460) - T[1-510] 2.0E-227
Gene3D
ARM-like (IPR011989) - T[16-506] 1.8E-98
Pfam
Clathrin/coatomer_adapt-like_N (IPR002553) - T[23-497] 8.9E-112
SUPERFAMILY
ARM-type_fold (IPR016024) - T[27-471] 6.72E-79

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
COPB_HUMAN 73.152 % 787 0