- Clone 'cign003j07' >
- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chr5.g60664.01.t
Possible name(s)
SRSF4; SRSF5; SRSF6
Gene model
Location
chr5 [9,585,501 / 9,586,542]
Amino acid sequence
Length: 346
>Boschl.CG.Botznik2013.chr5.g60664.01.p
MSSNRIYMGRLSHRARESDIERFFRGYGRIREIMLKNGYGFVEFDDHRDADDAVHDLSGK
ELCGERIVIEIARGTPRGAGGAFVGGYYPPPPPPRHRDYGGYGGDRGGYGHGGGRRGGGG
GGGYGPPSHTEYRVIVENLSSRVSWQDLKDYMRQAGEVTFADAHRYRKNEGVVEFVSKSE
MEHAIEKLDGTEINGRRIKLTKDNSRKRRNDSRSRSRSRSRGRDRKSRSKSRSRSRSRSG
SRGRKRSRSRDDRNGRSRSRSDSGSPAKKKDRSRSRSEDRKSKSDEDHNDREKADDVPDN
EENGDNERKSRSKSRSASPRSDRKESRSRSRSRSKSRSRSRSRSQS
Nucleotide sequence
Length: 1,041
>Boschl.CG.Botznik2013.chr5.g60664.01.t
TATGTCTTCGAATCGTATTTACATGGGAAGACTTAGCCATAGGGCTCGGGAAAGCGATAT
AGAACGCTTTTTTCGGGGTTATGGAAGGATCCGCGAAATAATGCTCAAGAACGGGTACGG
TTTTGTCGAGTTTGATGATCACAGAGATGCCGACGACGCCGTACACGATCTAAGCGGAAA
GGAGCTTTGCGGGGAGAGGATAGTGATTGAGATCGCTAGAGGAACCCCGCGAGGTGCCGG
TGGAGCGTTTGTAGGTGGCTATTACCCACCTCCTCCACCACCAAGGCACCGCGATTACGG
AGGATACGGTGGCGACCGAGGTGGATATGGACACGGTGGTGGGAGAAGAGGTGGTGGTGG
TGGAGGTGGATATGGCCCTCCGTCACATACAGAGTACCGTGTAATCGTGGAGAATCTTTC
TTCAAGAGTTAGTTGGCAGGATTTGAAAGACTACATGAGACAAGCGGGAGAGGTGACTTT
TGCTGATGCTCATCGGTATCGTAAAAACGAGGGTGTTGTTGAATTTGTTTCGAAAAGCGA
GATGGAACATGCAATTGAAAAGCTTGACGGAACTGAGATTAACGGGAGAAGGATCAAATT
AACCAAAGATAACTCACGCAAGAGACGTAACGACTCCAGATCCCGTAGCAGAAGCCGTAG
TCGCGGCCGAGATCGCAAGTCTCGCAGCAAGTCCAGAAGTCGCAGTCGCTCTAGAAGTGG
CAGCAGGGGGCGCAAAAGGTCACGAAGCCGTGACGATCGAAATGGACGTTCTAGGTCTCG
CAGTGATTCAGGCTCGCCAGCCAAGAAAAAGGATCGCTCAAGGTCAAGATCTGAAGACCG
GAAATCGAAATCAGACGAAGACCACAACGATCGTGAAAAAGCAGACGATGTCCCGGATAA
TGAAGAGAATGGCGATAATGAGAGAAAATCCAGAAGCAAGAGCAGGTCCGCGTCTCCGCG
TAGCGATCGCAAGGAGTCCAGAAGTCGTAGCCGTTCTCGGTCCAAGTCCCGCTCCAGGTC
TCGATCCAGAAGCCAGAGTTG
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[1-80] 3.4E-19 - T[131-204] 2.0E-24 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[3-84] 5.19E-34 - T[129-202] 5.19E-34 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[4-74] 16.381 - T[132-205] 12.782 |
| SMART |
RRM_dom (IPR000504) - T[5-70] 4.1E-16 - T[133-201] 6.6E-15 |
| CDD |
RRM1_SRSF4-like (IPR035585) - T[5-74] 9.57689E-36 |
| Pfam |
RRM_dom (IPR000504) - T[6-67] 7.3E-15 - T[134-199] 5.0E-13 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SRSF4_HUMAN | 63.317 % | 250 | 2.74E-79 |
| SRSF6_HUMAN | 58.911 % | 221 | 6.48E-70 |
| SRSF5_HUMAN | 73.077 % | 122 | 9.97E-33 |