Aniseed - Transcript Card

Transcript Model

Transcript Id

Boschl.CG.Botznik2013.chr5.g62075.01.t

Possible name(s)

EXD1; EXOSC10

Gene model

Boschl.CG.Botznik2013.chr5.g62075

Location

chr5 [8,721,694 / 8,722,936]

Sequences

Amino acid sequence

Length: 413

>Boschl.CG.Botznik2013.chr5.g62075.01.p
MASSSVPSSSSSVEDVPQFTTNLLKTVSSAVKASASLPHSGDDYDLYCSFSGFREFYAEQ
SSRLTRTLNTFMTHQGVRLLPSQESGVGDIDDSYDRIVEANDTMLEQVAGLLEKASDPEK
NVVNPEILSTDSPAQNIPKTVVSSWNRNRKSGKNQMFRLFHAQNISRPQTNFSVKIDNSN
VPFVPKIKEKPNATKPLPKALVDLNTQQDGIISLAITHLVRQGRDYSMEDQDIYTHPYQF
ELNSLQYNQEQMQEVEPQKYDPFPPQPCEVITAKMDLISVVDHLRTCKEIAVDLEAHSYR
TFQGLTCLMQISSRNKDFLIDTLALRSEIYRFNEVFTDPKIVKVFHGADFDIQWLQRDFG
VYVVNMFDTGQAASRCWVYRVFLLTSCCKNTATYMPTKSINWPTGGSGRYPKK

Nucleotide sequence

Length: 1,242

>Boschl.CG.Botznik2013.chr5.g62075.01.t
TATGGCGTCATCTTCCGTACCATCGTCATCTTCCAGTGTCGAAGATGTCCCGCAGTTCAC
GACCAATTTGTTGAAAACTGTTTCTAGCGCGGTCAAAGCCAGCGCTTCCTTGCCGCATTC
TGGAGACGACTATGACTTGTACTGCAGTTTTTCTGGATTTCGAGAATTCTACGCCGAACA
ATCGTCGCGTTTGACAAGAACTCTCAACACATTTATGACTCACCAAGGAGTTCGATTATT
ACCGAGTCAAGAATCGGGAGTCGGAGACATCGATGACAGCTACGATAGAATCGTCGAGGC
AAATGACACCATGTTAGAGCAGGTGGCGGGATTGTTGGAAAAAGCCAGCGACCCTGAAAA
GAATGTTGTTAATCCGGAGATATTATCAACCGACAGCCCGGCTCAGAATATTCCGAAAAC
GGTAGTATCGTCATGGAATCGAAACAGAAAGAGCGGAAAAAATCAAATGTTTCGCCTATT
CCATGCGCAAAACATTTCAAGGCCTCAAACCAATTTCAGCGTCAAAATAGACAACTCTAA
CGTTCCGTTTGTGCCCAAAATTAAGGAAAAACCCAACGCTACAAAGCCCTTACCGAAAGC
TTTGGTAGATCTGAACACGCAACAAGATGGAATCATTTCTCTAGCCATCACACATCTTGT
ACGCCAAGGCAGAGACTACAGCATGGAAGACCAAGACATATACACCCACCCGTACCAATT
TGAACTAAACTCCCTGCAATATAACCAAGAACAGATGCAAGAAGTGGAACCGCAAAAATA
CGACCCTTTTCCTCCGCAACCTTGCGAAGTAATCACCGCCAAAATGGATTTGATATCGGT
TGTGGACCATTTGAGAACTTGCAAAGAGATCGCCGTAGATTTAGAAGCGCACTCGTATCG
GACTTTCCAAGGGTTGACTTGTTTGATGCAGATCTCTTCGAGAAATAAAGATTTTCTCAT
CGACACGCTGGCGTTGCGGTCGGAAATTTATAGATTCAACGAAGTCTTCACGGATCCAAA
GATCGTCAAAGTATTTCACGGTGCTGATTTCGACATCCAATGGCTTCAGCGCGATTTCGG
GGTTTACGTGGTGAACATGTTCGACACGGGACAAGCGGCTAGTAGGTGCTGGGTCTATCG
CGTTTTTCTCTTGACTTCTTGCTGCAAAAATACTGCGACGTACATGCCGACAAAAAGTAT
CAATTGGCCGACTGGCGGATCCGGCCGATACCCGAAGAAATG

InterProScan

Pfam	Exosome-assoc_fac_Rrp6_N (IPR012588) - T[29-115] 1.3E-14
SUPERFAMILY	RNaseH-like_sf (IPR012337) - T[165-379] 3.17E-50
SMART	3'-5'_exonuclease_dom (IPR002562) - T[268-411] 3.2E-14
Pfam	3'-5'_exonuclease_dom (IPR002562) - T[269-388] 1.6E-25

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
EXOSX_HUMAN	47.978 %	330	2.65E-105