- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chr5.g63007.01.t
Possible name(s)
MLH1; PMS1; PMS2
Gene model
Location
chr5 [8,311,077 / 8,313,399]
Amino acid sequence
Length: 773
>Boschl.CG.Botznik2013.chr5.g63007.01.p
MEIADIPVIKRLQEDVVNRIAAGEVIQRPSNAIKEMLENSLDAGSKNITVSLKGGGLKML
QILDDGHGIRKEDMKIVCERFTTSKLREFSDLSSMTTFGFRGEALASISHVSHLAICTRT
KDSQCAYKATYADGRIKDSPRPTAGSIGTQITVEDLFYNVPTRRKALNNPADEHQRIADV
ISKYSIHNAGVSFTLRKAGEGGPSGGISVRTQQGSSILDNIGVIYGTKISKDLISIEQQN
TSLKFEMHGYVSNANCSMKKFILLLFINNRLVDCSPLKRSLANVYQTFLPKGTHPFVYMS
LKIAPANIDVNVHPTKHEVHFLHEAEIIESIQRAVEVKLRSCDTSRTFYTQTLLPNVSIN
LSEVMTKKSNSSEIKTYAHETIRTDGKLQKLDAFLKPRSANSSMSTSNDCQQDIITKLTE
PVDNIARSTADRTISKLPVQNLSGSVAMEIDSIEPPSKKLCVESLPLAKNDVQISKANNE
KQKSDTTTSSFPKRKHIRLTSVLKLQQEIKENAHDDLVKVIGNHVWVGCIDPELALIQFE
TKLFMTNTSRLSEELFYQIMVFDFGNFGIYRLSEPVPVFDMVMLALNSTECGWQPADGNK
IELAKNVVEFLKTKREMLADYFSLEVNEEGNIVGLPMLLPDYEPSMEGLPMFLLRITTEV
NWESEIECFRTFCRECARFYSVRKGYINMPNLLKNTQMDTAPDDSVIADSSVDCEGSCFN
SQNSDSKSWKWVVEHLVYRALQRILLPGKSMLSDGTFLQLASLPDLYKVFERC
Nucleotide sequence
Length: 2,322
>Boschl.CG.Botznik2013.chr5.g63007.01.t
GATGGAGATCGCCGATATACCCGTGATTAAAAGACTCCAGGAAGATGTAGTCAATCGCAT
TGCTGCTGGTGAAGTTATCCAGAGACCCTCGAACGCCATTAAGGAGATGCTAGAAAACAG
CCTGGACGCCGGTTCGAAAAATATTACAGTCTCGCTCAAGGGCGGAGGACTCAAAATGCT
ACAGATTTTGGATGATGGTCACGGAATCCGTAAAGAGGATATGAAAATTGTCTGCGAGCG
TTTCACTACCAGCAAACTTCGCGAGTTTAGTGACCTCAGTAGCATGACCACATTTGGATT
TCGCGGAGAGGCTCTTGCCAGCATCAGTCATGTATCGCATTTGGCAATATGCACCCGCAC
GAAAGATAGTCAATGTGCATACAAAGCTACATATGCTGATGGACGTATAAAAGACTCTCC
TAGGCCAACAGCAGGAAGTATTGGTACGCAGATAACAGTAGAGGACCTGTTTTACAATGT
ACCCACTAGAAGAAAAGCACTTAACAATCCAGCCGATGAACACCAAAGAATCGCTGATGT
AATCAGTAAATACTCAATACATAATGCCGGGGTGTCATTTACATTGCGCAAAGCTGGCGA
AGGTGGACCTTCCGGTGGAATATCAGTTAGAACCCAACAAGGTTCTTCGATTCTGGATAA
CATCGGTGTCATATATGGGACTAAGATTTCGAAAGATTTGATAAGCATCGAGCAACAAAA
TACCTCCCTGAAATTTGAAATGCATGGCTACGTTAGTAATGCTAACTGCTCCATGAAAAA
GTTCATACTTCTTCTATTCATCAACAATCGTCTTGTGGATTGCTCTCCGTTGAAACGAAG
CTTGGCAAATGTGTATCAAACGTTTCTCCCTAAAGGCACACACCCGTTTGTTTATATGAG
TCTTAAAATCGCGCCTGCAAACATTGATGTCAACGTACACCCGACGAAGCATGAAGTTCA
TTTTTTGCATGAAGCAGAAATCATAGAGTCGATCCAGAGAGCGGTCGAAGTCAAGCTACG
GAGTTGCGACACTTCCCGTACATTTTATACCCAAACGCTTCTTCCAAATGTGTCTATCAA
TTTATCAGAAGTAATGACGAAAAAAAGCAATAGCAGTGAAATTAAAACTTATGCTCACGA
AACAATCAGAACTGATGGTAAATTACAAAAGCTTGACGCATTCCTGAAACCGCGATCCGC
AAACAGCTCCATGAGTACTAGTAACGATTGTCAACAAGATATCATAACCAAACTTACAGA
GCCAGTAGATAACATTGCAAGATCTACAGCAGATAGAACAATTTCCAAATTACCTGTCCA
AAACCTTTCTGGTTCTGTCGCCATGGAAATAGATTCGATTGAACCCCCATCTAAGAAACT
GTGTGTTGAAAGTTTACCGCTGGCAAAAAATGATGTTCAAATTTCCAAAGCCAACAATGA
AAAACAGAAGAGCGATACAACTACGTCATCTTTTCCGAAACGAAAGCATATAAGACTGAC
AAGTGTGTTGAAATTGCAGCAAGAAATAAAAGAGAACGCGCATGACGACCTCGTAAAAGT
CATTGGGAATCATGTCTGGGTTGGATGCATTGATCCGGAATTGGCATTAATCCAGTTTGA
AACCAAGCTATTTATGACCAACACATCTAGGCTGTCTGAAGAGCTCTTCTATCAGATTAT
GGTGTTTGATTTCGGAAACTTTGGCATATACCGACTTTCCGAGCCAGTACCAGTTTTCGA
TATGGTCATGCTTGCGTTGAATAGCACTGAGTGTGGATGGCAGCCGGCTGATGGCAACAA
AATTGAGCTGGCAAAAAACGTTGTTGAGTTTCTCAAAACAAAACGTGAAATGTTGGCTGA
TTACTTTTCGCTCGAAGTGAACGAGGAGGGTAATATCGTCGGATTACCGATGCTCTTGCC
AGATTACGAGCCTTCGATGGAGGGATTGCCGATGTTCTTACTACGAATCACAACGGAAGT
TAATTGGGAATCTGAAATCGAGTGTTTTCGAACTTTTTGTAGGGAGTGTGCGAGATTTTA
TTCAGTACGAAAAGGATATATCAACATGCCCAATCTGCTGAAAAACACTCAAATGGACAC
GGCTCCTGACGACAGCGTCATTGCAGATTCTTCCGTTGATTGCGAAGGTTCTTGTTTCAA
CAGTCAAAACTCTGATTCCAAGTCTTGGAAGTGGGTTGTCGAGCATTTGGTGTATAGAGC
ACTGCAGAGGATTTTGCTGCCTGGAAAATCTATGTTGAGCGATGGAACATTCCTGCAATT
GGCTAGCTTGCCAGATCTCTATAAAGTCTTTGAGCGATGTTA
| PANTHER |
DNA_mismatch_repair_MLH1 (IPR011186) - T[8-773] 1.5E-256 |
| Gene3D |
HATPase_C_sf (IPR036890) - T[8-225] 2.3E-75 |
| TIGRFAM |
DNA_mismatch_repair_fam (IPR002099) - T[9-320] 3.1E-99 |
| SUPERFAMILY |
HATPase_C_sf (IPR036890) - T[9-226] 5.89E-49 |
| CDD |
HATPase_C (IPR003594) - T[32-114] 2.36807E-7 |
| ProSitePatterns |
DNA_mismatch_repair_CS (IPR014762) - T[99-105] . |
| SUPERFAMILY |
Ribosomal_S5_D2-typ_fold (IPR020568) - T[207-337] 2.39E-30 |
| SMART |
DNA_mismatch_repair_C (IPR013507) - T[221-340] 1.4E-42 |
| Pfam |
DNA_mismatch_repair_C (IPR013507) - T[223-338] 3.5E-32 |
| Gene3D |
Ribosomal_S5_D2-typ_fold_subgr (IPR014721) - T[226-352] 7.4E-46 |
| Pfam |
Mlh1_C (IPR032189) - T[498-773] 3.5E-89 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PMS2_HUMAN | 28.307 % | 147 | 1.6E-36 |
| PMS1_HUMAN | 25.568 % | 114 | 6.75E-26 |
| MLH1_HUMAN | 50.127 % | 790 | 0 |