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  1. Transcript 'Boschl.CG.Botznik201...'

Transcript Model

Transcript Id

Boschl.CG.Botznik2013.chr5.g69732.01.t

Possible name(s)

PCF11; RPRD1A; SCAF8

Gene model

Boschl.CG.Botznik2013.chr5.g69732

Location

chr5 [3,201,357 / 3,207,464]

Sequences

Amino acid sequence

Length: 405

>Boschl.CG.Botznik2013.chr5.g69732.01.p
MAKTIAEEYRSSLEDLTFNSKPHINVLTMLADEYQDNADLVVRVIEEKLEKALPNCKLPI
MYLMDSIVKNVGGNYKPLFAKNIVKSFLIPFRQGDDKVKMSLYKLRSTWDSHFPLKRLYE
LDATIHTMDANWPVKPLPASLLEKTPSIHVNPKFLKKGDVSSAPSTPKISTVKTAGHSIS
DGSDLKQDLINKQKQLLELQQQKLLLELEQTKQQLAMREKKTLQRKEGTAVTRDPRVKQV
TGARAAVKTTLTNGDARDPRSKAKATPADPRKAVSDPTRKAPKKQEAAKPKSLEKKSPTE
TDKPEKKKKVTKSTGKSAAAKTGKEMPPKSPKSGPVKKQVPKKNSGKAPKRTSDENRVDD
EAKVPKKNDATSVKDSKVKEKVPRRSPLPTQPPVRHPKRNTSTER

Nucleotide sequence

Length: 1,218

>Boschl.CG.Botznik2013.chr5.g69732.01.t
GATGGCGAAGACCATCGCCGAAGAGTACAGAAGCTCTCTGGAGGATCTGACTTTCAATTC
GAAGCCACATATCAACGTACTTACGATGCTTGCTGACGAATACCAAGATAATGCAGATTT
GGTTGTTCGGGTGATTGAGGAAAAGCTTGAAAAGGCTCTTCCGAATTGCAAGTTGCCGAT
AATGTATCTCATGGACTCCATTGTCAAAAACGTTGGTGGAAACTACAAACCTCTATTTGC
AAAGAATATTGTGAAAAGCTTTTTGATACCGTTTCGACAGGGAGATGATAAAGTAAAGAT
GTCTCTCTACAAATTGCGATCAACTTGGGATAGCCATTTTCCCTTGAAGCGTCTCTACGA
GCTCGATGCGACTATCCACACGATGGATGCCAATTGGCCAGTCAAGCCGTTACCAGCAAG
TCTGCTAGAGAAAACGCCTAGTATTCACGTGAATCCCAAGTTCCTGAAAAAGGGTGATGT
GTCATCTGCACCCTCAACACCCAAAATTTCTACAGTCAAAACCGCGGGACATTCTATATC
TGACGGCAGTGATCTGAAGCAAGATCTTATTAACAAGCAAAAGCAGCTCTTAGAGTTGCA
GCAACAGAAACTGCTCTTGGAACTGGAGCAAACCAAACAGCAGCTCGCAATGCGAGAGAA
AAAGACATTGCAACGAAAGGAGGGCACTGCAGTAACGAGAGATCCACGTGTCAAGCAAGT
AACAGGTGCTCGCGCAGCTGTCAAGACAACACTTACTAATGGAGATGCCAGAGATCCTCG
TTCCAAAGCGAAGGCTACGCCAGCGGACCCCCGCAAGGCGGTTTCTGATCCAACACGTAA
GGCACCAAAAAAACAGGAAGCCGCCAAACCAAAATCGCTGGAAAAGAAATCACCCACCGA
AACCGATAAACCAGAGAAGAAAAAGAAGGTCACAAAAAGCACCGGCAAGTCCGCCGCTGC
GAAAACAGGCAAGGAAATGCCACCCAAGAGTCCAAAATCTGGACCCGTTAAAAAACAGGT
TCCGAAAAAAAATTCCGGAAAGGCGCCCAAACGTACGTCGGACGAGAATAGAGTGGATGA
TGAGGCAAAGGTTCCGAAAAAGAATGACGCGACATCGGTCAAGGACAGTAAAGTAAAGGA
GAAAGTTCCGAGAAGGTCGCCTTTGCCGACCCAACCGCCTGTGAGGCATCCTAAACGCAA
CACTTCTACGGAACGGTA

InterProScan

Gene3D
ENTH_VHS (IPR008942) - T[1-131] 3.5E-36
ProSiteProfiles
CID_dom (IPR006569) - T[1-129] 30.927
SUPERFAMILY
ENTH_VHS (IPR008942) - T[4-137] 2.4E-37
SMART
CID_dom (IPR006569) - T[4-126] 2.0E-22
Pfam
RNA_pol_II-bd (IPR006903) - T[57-111] 3.3E-6

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
PCF11_HUMAN 51.818 % 212 9.02E-61