- Clone 'cima877605' >
- Clone 'cima8110165' >
- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chr6.g07951.01.t
Possible name(s)
COL12A1; COL7A1; TNN
Gene model
Location
chr6 [8,477,754 / 8,490,057]
Amino acid sequence
Length: 755
>Boschl.CG.Botznik2013.chr6.g07951.01.p
MDVLAINLPNDTSTPIEAWPQYVALVGLTESVSIYNNTPTSFSVNWTRIEATIRHKVTVL
DQTGTSHGEILETGLSAYFSGLPSGTQFTVTVMYLDKLGYNGSISANGSTSSTYPSGLSV
SGMEQTKAVASWEELAGATNYRVDWGTDTMTTKDLTVTIDSLTPGTQYNVSIAATFGTSG
GTWTTNPQTVSFTTAPANVTVSSITVIGTTTVDLSWTTVQGAEKYEVILAPATPGDTIRT
NYTTISDSVTNLIPGTYYSGSITAFSLSGKSFPTEFNFTTKLLSDTHNASVSGITVNSLT
VSWTSVDSASHIFVDVRKSSNASWIFEELVSPVGTTQKTLSNLSGGTKYVIAVIATSNAG
ANHTFNVIQTQTDTAPPSNIRIESPTSTTNSSFVLNWDTTEGAISYSVASKSVISPPTEF
TGLRPGKAHEVSVTAVYETGQENATARDLWTLPADVKDLFVRAVTESTFEALWNVTIEPN
VTYTVRLLRITSGQVEKEYENASSGQEFKGAIPGRKYRVSVKARNPSGESQGATESEMFE
TALSSPKVRNESVSKRQFRILWDEVKGASRYQYKCGNNISEDTKTTYKLIVGLEPNTEYH
CNVTAYSDDGVASVPGKISVTTAVNPCDNPVCFNGGTCQEQGQGYECQCPQAYDTQDCKN
VTDWCTSRGTKDTCKENSECRNDPILLRGVCECQAGFRGNGTVGCVRYCDANNLEGFHFD
LTDVGATAYSLQNKCRQYQFVIYRGYRMKYMQQTL
Nucleotide sequence
Length: 2,268
>Boschl.CG.Botznik2013.chr6.g07951.01.t
CATGGACGTGTTAGCCATAAACTTACCCAACGACACCAGCACACCTATTGAGGCGTGGCC
CCAGTATGTCGCATTGGTGGGACTTACCGAATCAGTTTCCATTTACAACAACACGCCCAC
CAGCTTCTCAGTGAACTGGACCAGAATCGAGGCTACCATCAGGCACAAAGTCACGGTTCT
AGACCAAACTGGCACGAGTCACGGTGAAATATTGGAAACAGGACTCTCGGCCTACTTCTC
CGGACTTCCGAGCGGGACTCAATTTACCGTCACAGTCATGTACCTTGACAAGCTTGGATA
CAATGGCTCGATATCTGCAAATGGATCGACGGCGTCTACGTATCCAAGCGGGCTCTCCGT
CTCTGGCATGGAACAGACAAAAGCGGTGGCTTCATGGGAAGAATTAGCCGGCGCTACAAA
TTACAGGGTTGATTGGGGAACGGATACGATGACAACGAAAGACCTCACAGTGACAATTGA
TTCCCTAACACCCGGTACGCAATACAACGTGTCAATCGCCGCGACGTTCGGTACTAGCGG
GGGTACTTGGACTACAAATCCACAGACTGTTTCCTTCACGACAGCACCCGCGAATGTAAC
TGTCTCGTCGATAACGGTAATTGGAACAACTACAGTCGACCTATCGTGGACTACAGTCCA
GGGTGCTGAGAAATACGAAGTCATTCTGGCCCCAGCAACCCCAGGCGATACCATCCGCAC
CAACTATACAACGATTAGTGATAGTGTTACAAATCTCATCCCCGGTACTTATTACAGTGG
ATCTATAACCGCATTCAGTCTCTCCGGAAAGAGCTTTCCGACCGAATTTAACTTCACTAC
AGAGCTCTTAAGCGATACCCACAACGCCTCCGTCTCAGGAATTACTGTCAATTCACTCAC
AGTAAGTTGGACTTCGGTTGACTCTGCATCTCACATCTTCGTGGACGTCAGGAAATCAAG
CAATGCATCATGGATATTTGAAGAGTTGGTGTCACCTGTTGGCACGACGCAAAAGACACT
GAGCAACCTGTCGGGCGGAACTAAATATGTCATTGCAGTGATTGCAACGAGCAATGCGGG
CGCAAACCACACTTTTAATGTTATACAAACACAAACCGACACGGCTCCCCCAAGCAACAT
ACGAATCGAATCTCCTACGAGTACTACGAATAGCAGCTTCGTTCTGAATTGGGATACAAC
CGAGGGTGCAATCAGTTACAGTGTGGCGAGTAAGTCCGTGATCTCGCCACCGACCGAATT
CACCGGATTGAGACCAGGCAAGGCCCACGAAGTGTCCGTGACAGCCGTGTACGAGACCGG
GCAAGAGAATGCGACAGCGCGGGATCTGTGGACGGTACCTGCCGACGTCAAAGATCTATT
CGTTCGGGCCGTGACCGAGAGCACATTCGAGGCGCTTTGGAATGTTACGATTGAACCGAA
CGTCACGTACACCGTCAGGCTGCTACGAATCACGAGCGGCCAGGTCGAGAAAGAGTACGA
AAACGCATCGTCGGGACAAGAGTTTAAAGGCGCCATACCCGGCAGAAAATACAGAGTGTC
TGTAAAGGCGCGAAATCCTTCAGGAGAGAGCCAAGGCGCCACTGAGAGCGAGATGTTTGA
AACGGCGTTGTCATCGCCAAAAGTGCGGAACGAGTCGGTTTCGAAGCGTCAATTTCGTAT
TCTGTGGGACGAAGTGAAGGGAGCGTCCCGATATCAGTATAAATGCGGCAATAATATTTC
TGAGGATACGAAGACGACCTACAAGCTCATCGTCGGTCTTGAACCCAACACTGAATATCA
CTGTAACGTCACCGCGTACTCGGACGATGGCGTGGCAAGCGTACCTGGCAAGATATCTGT
TACAACAGCTGTAAATCCATGCGACAACCCGGTCTGTTTCAACGGCGGCACTTGTCAAGA
ACAAGGGCAAGGTTACGAATGCCAATGCCCACAGGCGTACGACACGCAAGACTGCAAAAA
CGTAACGGATTGGTGTACTTCACGTGGCACCAAAGACACTTGCAAAGAAAACTCGGAATG
CAGGAACGACCCCATATTGCTTCGCGGCGTGTGCGAATGCCAAGCCGGCTTCCGCGGTAA
TGGCACAGTAGGATGTGTTGGATACTGTGACGCAAACAACCTCGAAGGATTTCACTTTGA
TCTAACCGACGTTGGGGCCACCGCCTACTCGCTGCAAAATAAGTGCCGTCAGTATCAATT
CGTAATTTATAGGGGATATCGTATGAAATATATGCAGCAGACACTTTG
| SMART |
FN3_dom (IPR003961) - T[26-101] 11.0 - T[112-179] 4.4E-6 - T[196-271] 0.015 - T[283-362] 0.0061 - T[374-442] 1.8E-6 - T[453-530] 0.0028 - T[543-612] 0.0099 |
| ProSiteProfiles |
FN3_dom (IPR003961) - T[28-113] 6.241 - T[114-194] 8.008 - T[195-285] 12.474 - T[286-377] 9.72 - T[452-544] 10.462 - T[545-626] 7.125 |
| Gene3D |
Ig-like_fold (IPR013783) - T[111-193] 1.0E-7 - T[194-283] 2.0E-8 - T[284-375] 1.9E-9 - T[448-537] 3.3E-5 - T[540-626] 2.8E-6 |
| SUPERFAMILY |
FN3_sf (IPR036116) - T[114-277] 7.78E-12 - T[288-378] 7.61E-11 - T[389-531] 6.22E-9 - T[546-630] 3.42E-6 |
| CDD |
FN3_dom (IPR003961) - T[115-194] 4.25136E-5 - T[195-280] 2.41325E-5 - T[290-360] 4.97017E-5 - T[453-541] 0.0010766 |
| ProSiteProfiles |
EGF-like_dom (IPR000742) - T[623-659] 15.996 - T[661-706] 8.847 |
| SMART |
EGF-like_dom (IPR000742) - T[626-659] 0.072 - T[664-706] 3.8 |
| ProSitePatterns |
EGF-like_CS (IPR013032) - T[691-705] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TENN_HUMAN | 25.089 % | 82.8 | 4.37E-16 |
| FINC_HUMAN | 24.842 % | 93.2 | 2.74E-19 |
| CO7A1_HUMAN | 24.667 % | 89.4 | 4.86E-18 |