- Transcript 'Harore.CG.MTP2014.S3...' >
- Transcript 'Boschl.CG.Botznik201...' >
- EST 'BW407473' >
- Transcript 'KH2012:KH.S742.2.v1....' >
- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chr6.g29700.01.t
Possible name(s)
GAPVD1; RABGEF1; RIN3
Gene model
Location
chr6 [9,871,671 / 9,873,390]
Amino acid sequence
Length: 572
>Boschl.CG.Botznik2013.chr6.g29700.01.p
MASVKLHGRKGIHLDESDLKCKNGCGFYGNSAWQGYCSQCWKEINNSQRQQQIQQDHEFA
KKLQEEENERANATQTAAGPPQIRPPSEQRTLHSHTQYPPRPSTAKEEDVRGFAPRSTTV
LKKFFSPNSESDTSPINRSKSASDPAVRHKIQQSPVSSRKLKSGRLYKGATGQAERPNTR
PVSRKHSFESQQASRDFSEFIKALQEPASSDMIKQCRAFMDKLIANKAMKVDAQAELVQD
FYEVMANRIGTHQVFGKYSSEKDRDRIMDNIEKFVMTRVYRTVFCSDQTDDESRDLEVQK
KIRSLHWVTTDMLDAQFKEDVPNVTAAMDSAITAIIEMDSKRAPQDKLSCITRCSKAIFE
ALKHSKENETPASADDFLPALIYVVLKANPPMLKSNISYVTRFSNPVRLMAGEDAYYFTN
LCCAVEFIESGLNASSLSLTEEEFDDYMSGNFAKLQNTVKHPEPGRDHRMCPGLELMYKN
LNDLADLDQRMDALFADAVDLQRDIQLHSQFVRESAAEELAKPVPDMSKVKRDQDNEVLE
LNKFRHTHSDIVSALDAEIPSDLPPPLLPVHK
Nucleotide sequence
Length: 1,719
>Boschl.CG.Botznik2013.chr6.g29700.01.t
TGGCGTCTGTGAAGTTACACGGACGAAAAGGCATTCATTTGGACGAGTCCGATTTGAAAT
GCAAGAACGGTTGCGGTTTTTACGGCAACTCTGCGTGGCAAGGATACTGCTCCCAATGCT
GGAAGGAGATAAACAACTCGCAAAGACAACAGCAAATCCAGCAGGACCATGAATTCGCGA
AAAAACTTCAGGAGGAAGAAAACGAGAGAGCAAACGCGACACAGACCGCTGCCGGGCCCC
CACAGATAAGACCGCCGTCCGAACAACGCACTTTGCACAGTCATACACAATATCCGCCTC
GACCGTCAACCGCTAAAGAGGAAGACGTGCGCGGTTTTGCACCTCGTTCTACTACTGTTT
TAAAAAAATTCTTTTCTCCAAATAGCGAAAGCGATACTTCCCCAATTAATCGATCAAAAT
CCGCTAGCGATCCAGCCGTTCGGCATAAAATTCAGCAATCACCCGTAAGCAGTCGCAAAT
TGAAATCCGGCCGTCTTTACAAGGGCGCTACAGGCCAAGCGGAAAGGCCGAATACGCGAC
CCGTGTCTCGTAAGCATAGTTTCGAATCGCAACAAGCGTCTAGAGATTTTAGCGAATTTA
TAAAGGCGTTGCAAGAGCCCGCTTCTTCGGACATGATCAAGCAATGTCGCGCGTTTATGG
ACAAACTCATAGCGAACAAAGCAATGAAAGTGGACGCCCAGGCGGAACTGGTGCAGGATT
TTTACGAAGTGATGGCGAATCGTATCGGAACCCATCAAGTCTTCGGCAAATATTCTTCGG
AAAAAGACAGAGATCGCATCATGGACAATATCGAGAAATTCGTAATGACACGAGTTTATC
GGACTGTGTTCTGCAGCGATCAGACGGACGACGAAAGTCGCGACTTGGAAGTGCAGAAGA
AAATCCGCAGCTTGCACTGGGTCACCACGGATATGCTGGATGCCCAGTTCAAAGAGGATG
TCCCGAACGTGACCGCCGCGATGGATTCAGCAATCACCGCCATTATAGAAATGGATTCCA
AACGAGCGCCTCAAGATAAACTATCTTGTATTACAAGATGTAGCAAAGCGATTTTCGAAG
CGCTCAAACACTCGAAAGAAAACGAGACGCCAGCCAGCGCCGATGACTTTCTGCCGGCTT
TAATATACGTGGTGCTAAAAGCCAACCCGCCGATGCTCAAATCTAACATCAGTTACGTCA
CAAGGTTTTCAAATCCTGTCAGGCTGATGGCCGGCGAAGATGCCTACTACTTCACAAACC
TTTGCTGCGCCGTCGAGTTTATCGAAAGCGGACTCAACGCGTCCAGCTTGTCTCTGACGG
AAGAGGAGTTTGACGATTACATGAGCGGGAACTTCGCCAAGCTGCAAAACACTGTGAAAC
ATCCCGAGCCCGGCAGAGACCACCGCATGTGCCCAGGTTTGGAGTTGATGTACAAAAATT
TAAATGATCTCGCCGACTTAGATCAAAGGATGGATGCGCTTTTTGCAGATGCCGTCGACC
TGCAACGGGACATTCAGTTGCACTCGCAGTTCGTGAGGGAGTCGGCAGCTGAGGAACTCG
CGAAACCGGTGCCCGACATGAGCAAAGTCAAACGCGACCAGGACAATGAAGTGCTCGAAT
TGAATAAGTTCCGACACACGCATAGCGACATTGTATCGGCGCTTGATGCGGAGATCCCGT
CTGATCTTCCACCCCCTTTACTGCCCGTGCATAAGTGAA
| ProSiteProfiles |
Znf_A20 (IPR002653) - T[15-49] 9.832 |
| SMART |
Znf_A20 (IPR002653) - T[18-42] 2.3E-10 |
| Pfam |
Znf_A20 (IPR002653) - T[19-42] 9.3E-12 |
| SUPERFAMILY |
VPS9_dom_sf (IPR037191) - T[194-449] 9.29E-69 |
| Gene3D |
VPS9_dom_sf (IPR037191) - T[288-459] 3.9E-64 |
| ProSiteProfiles |
VPS9 (IPR003123) - T[292-437] 37.361 |
| SMART |
VPS9 (IPR003123) - T[327-446] 2.5E-24 |
| Pfam |
VPS9 (IPR003123) - T[330-430] 2.2E-27 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| GAPD1_HUMAN | 29.954 % | 101 | 2.84E-22 |
| RABX5_HUMAN | 43.733 % | 296 | 1.18E-91 |