Login
Help

TRANSCRIPT CARD

Submit your Data

  1. Region 'REG00000868' > 
  2. Clone 'cima8116351' > 
  3. Transcript 'KH2012:KH.C12.47.v2....' > 
  4. Clone 'cinc029i11' > 
  5. Transcript 'Boschl.CG.Botznik201...'

Transcript Model

Transcript Id

Boschl.CG.Botznik2013.chr6.g55082.01.t

Possible name(s)

SPAG16; WDR5; WDR5B

Gene model

Boschl.CG.Botznik2013.chr6.g55082

Location

chr6 [4,087,303 / 4,090,629]

Sequences

Amino acid sequence

Length: 450

>Boschl.CG.Botznik2013.chr6.g55082.01.p
MTSEAEEGPFYLEAVSVEDDSDDDYQYEEVPIDDDTSTVDFIENLNDAVYAIEEGKRTSK
SHGAPMEPTSSRDTARSHRPEVIDDFVRNFLLKMGLHRTLNSFQTEWYELQQRGQLSEDD
VGVVPDAYIQNMNLRDEVKRLKGELAKFKSAGRKTKDAFVKVQKERDYHKMHHRRVVQEK
NRLIEDLKRLKSHYRSYEPTLRQLKHKYELAMKEKMLTKLERDRVAGQATGLQATLRNLQ
NGRQDPIPALTGYRAEREKKLEGPTQAALKDHRTQKPFGVENIPATQEKRSTHEKDSIFP
RDDCVNPLLSLSYPPPPHLTRMGGLKVTKTITAHDLAVSCVRIHPRKEIAVTASDDRLWK
MWSLLEGQIVMTGDGHTDWIADCDFHPTGKQLVTGGGDTTVKIWDFAKAHCVLTFGEHTA
SSMGSNMAFMRRLHSFLLNGLHLENLGSPK

Nucleotide sequence

Length: 1,353

>Boschl.CG.Botznik2013.chr6.g55082.01.t
AATGACATCAGAAGCGGAAGAAGGCCCATTCTACTTGGAAGCCGTATCTGTCGAAGATGA
CTCAGATGACGATTACCAATATGAAGAGGTTCCCATTGATGACGACACCAGCACTGTAGA
TTTCATTGAAAATTTAAATGATGCTGTTTACGCGATCGAAGAAGGAAAACGAACTAGCAA
AAGTCATGGAGCGCCTATGGAACCGACATCTTCCCGGGATACAGCACGCTCACATCGACC
TGAGGTGATCGATGATTTTGTTCGAAACTTTCTTCTCAAGATGGGATTGCATCGAACTTT
GAATTCTTTTCAAACCGAATGGTATGAATTGCAACAACGCGGACAGCTGTCTGAAGACGA
CGTTGGTGTTGTTCCTGACGCTTACATTCGAAACATGAATCTGAGAGATGAAGTTAAAAG
GTTGAAGGGGGAGCTGGCAAAGTTCAAGTCAGCCGGAAGGAAAACAAAGGATGCCTTCGT
CAAGGTTCAGAAGGAGAGGGACTATCACAAAATGCACCATCGCAGAGTTGTTCAAGAAAA
GAACAGACTCATCGAAGATCTTAAAAGGTTGAAGAGTCACTACAGATCTTATGAACCTAC
GCTCCGGCAACTGAAGCACAAATACGAGCTGGCGATGAAGGAAAAAATGTTAACGAAACT
TGAACGAGACCGCGTAGCTGGACAGGCGACGGGATTGCAAGCGACGTTACGGAATCTACA
AAACGGCAGACAAGACCCGATACCTGCGCTAACGGGATATCGCGCCGAACGGGAGAAAAA
GCTAGAAGGACCAACGCAAGCTGCATTGAAAGATCACAGAACACAGAAACCATTTGGCGT
AGAAAATATCCCTGCCACGCAAGAAAAGCGTAGCACTCATGAAAAGGACAGCATCTTCCC
TCGTGATGATTGCGTTAATCCTTTGTTATCGTTATCGTACCCACCCCCTCCTCATTTGAC
GAGAATGGGAGGCTTGAAGGTGACAAAGACTATCACGGCACATGACCTGGCGGTCAGCTG
TGTAAGAATTCATCCCAGAAAAGAAATAGCAGTAACAGCATCGGATGACAGACTGTGGAA
GATGTGGTCACTTTTAGAAGGGCAAATTGTTATGACTGGAGATGGCCACACTGATTGGAT
CGCTGACTGTGACTTTCATCCGAGTGGGAAACAATTAGTCACTGGTGGTGGGGATACTAC
GGTCAAGATTTGGGATTTCGCCAAAGCACATTGCGTGTTGACGTTTGGCGAGCACACTGC
AAGCAGTATGGGGAGTAACATGGCATTCATGCGGAGACTTCATAGCTTCTTGCTCAATGG
ACTGCACCTCGAAAATCTGGGATCTCCAAAGTG

InterProScan

Gene3D
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[319-433] 5.1E-26
SMART
WD40_repeat (IPR001680) - T[324-363] 6.1E-5 - T[366-405] 1.7E-10
SUPERFAMILY
WD40_repeat_dom_sf (IPR036322) - T[326-420] 9.46E-25
Pfam
WD40_repeat (IPR001680) - T[327-363] 0.054 - T[367-405] 5.0E-7
ProSiteProfiles
WD40_repeat (IPR001680) - T[331-372] 11.11 - T[373-414] 14.585
ProSiteProfiles
WD40_repeat_dom (IPR017986) - T[331-414] 21.305
ProSitePatterns
WD40_repeat_CS (IPR019775) - T[392-406] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SPG16_HUMAN 45.823 % 345 3.56E-113