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- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chr7.g01405.01.t
Possible name(s)
COL1A2; COL2A1; COL5A2
Gene model
Location
chr7 [10,963,098 / 10,984,376]
Amino acid sequence
Length: 1,337
>Boschl.CG.Botznik2013.chr7.g01405.01.p
MYSPTKMDGRQWHVFAVTLSLLICGIAAQGQKGEKGEPGSIEGLDASAITGEPGQKGDTG
DRGSPGNPGQKGDRGDQGPAGASGSPGVAGPPGEPGPPGPAGEGSSGSKGPSGLMAGPPG
PIGIRGAPGTSGPQGPQGFTGPVGEPGPVGPPGPPGSSGPSGLTGKDGTDGEDGKPGKPG
PIGNPGPIGPRGFSGSNGLPGPKGHNGHNGIDGEKGESGEPGEKGDAGRAGEMGKPGNLG
PRGMPGDRGRSGPPGPPGQAGNDGVTGPSGPPGAMGHQGPPGFPGAHGKKGDQGPGGADG
PAGPQGQRGESGTPGPPGPTGTTGNPGTPGKAGGKGSRGASGMMGSPGVPGSQGLPGPQG
GIGVPGMKGNQGSPGMTGYKGDQGPKGSLGSTGPQGLQGPQGEEGKRGQTGEPGSQGPAG
PKGLQGAQGSRGFPGQNGVSGPKGQRGDRGRRGVHGPKGSSGDVGRAGEPGVPGARGLTG
RQGTEGKQGKQGPPGPTGLDGRPGATGPMGARGAPGQIGFTGAKGAAGDDGKTGEKGLEG
PPGSRGQPGKDGEIGPQGQIGPPGEPGERGEQGRQGEQGFQGLQGVQGLTGEPGSPGEPG
VQGEVGPNGPSGERGERGYPGERGPGGADGNPGVRGPEGIAGKDGSKGAQGDAGKEGQRG
APGAQGPIGNRGPTGLEGPKGDRGDLGEPGSQGEPGPEGLRGLNGVPGPPGRIGSEGKKG
DAGPQGLEGQPGPIGKIGERGDPGPPGQRGYPGTAGPVGQSGKKGDLGARGQKGNEGSPG
QQGPSGGPGPQGAAGVTGPKGGRGTSGPPGPRGFVGATGRPGSSGPPGAPGQQGVEGAVG
KSGPRGARGQDGKPGQPGAPGDQGATGLQGPPGPSGEPGAPVDLAFLVYLDHKGLSVNVE
SLAHLATLESKVLSALPVTEDRPDNLERQVLWDRLVTSGPTGPQGLTGRDGSPGSKGDSG
PPGPRGQEGNIGAPGPIGSSGPEGKQGPRGEPGPSGVQGTPGPQGGRGNTGSQGVRGDKG
SSGDQGEQGPKGHRGFPGIQGIPGIQGKTGDPGLNGQAGPQGPTGKTGPRGPAGSDGQPG
SPGPMGPSGSRGGRGDDGMQGPQGPPGPRGAPGPPGETKVVTVSGLSSEKGPSRYYQDEG
IDGATVSRDNEVMLALKDISNTIDVMKSPLGEDKKSPSRSCHDLYLTAQQLDVSIKNGVK
WVDPNGGCPADAIEVYCNFDTKETCVYPNNPFINNATHGYTEYGRTVNKHVFMSDLSMNR
MSYDPAPESRIAGANYDSQLTFLRLLSSTARQNVTFWCQNMIAVNSLADDSTERALKLMG
YGGEVITRYRTIRDECA
Nucleotide sequence
Length: 4,011
>Boschl.CG.Botznik2013.chr7.g01405.01.t
TGTATAGCCCTACCAAGATGGACGGACGTCAGTGGCACGTATTTGCGGTGACTTTGAGTC
TCCTGATTTGCGGAATCGCCGCGCAAGGACAAAAAGGAGAAAAGGGGGAGCCCGGATCGA
TCGAAGGTCTGGATGCCAGCGCGATTACAGGAGAACCTGGTCAAAAGGGCGATACCGGAG
ATCGGGGATCACCTGGAAATCCTGGCCAGAAAGGAGATCGAGGTGACCAAGGACCTGCTG
GAGCAAGTGGTTCGCCAGGAGTTGCCGGGCCTCCCGGTGAGCCTGGTCCACCTGGTCCTG
CTGGCGAGGGAAGTTCGGGATCTAAAGGTCCAAGTGGCCTAATGGCTGGACCTCCTGGAC
CAATTGGTATCCGCGGCGCACCTGGAACATCTGGACCTCAAGGACCACAAGGTTTTACTG
GACCTGTTGGTGAACCCGGACCTGTTGGACCACCGGGCCCACCTGGATCTAGTGGACCGT
CTGGACTGACAGGCAAAGATGGAACTGATGGCGAAGACGGTAAACCAGGGAAACCAGGAC
CTATCGGAAACCCGGGACCAATAGGACCACGGGGTTTCTCAGGCTCAAACGGGTTACCAG
GACCAAAAGGGCACAACGGCCACAACGGAATCGACGGAGAAAAGGGCGAATCAGGTGAAC
CTGGAGAAAAGGGAGACGCCGGAAGAGCCGGGGAAATGGGAAAACCTGGAAACTTGGGTC
CAAGAGGCATGCCTGGTGATAGGGGACGGAGCGGACCTCCTGGACCTCCTGGCCAAGCTG
GAAATGATGGTGTCACTGGACCGAGTGGACCGCCGGGTGCGATGGGTCATCAAGGCCCAC
CGGGTTTCCCCGGTGCCCATGGCAAAAAGGGAGATCAAGGACCTGGCGGGGCTGATGGTC
CGGCTGGACCTCAAGGACAACGAGGCGAGAGCGGAACTCCTGGGCCACCAGGTCCCACTG
GCACTACGGGTAATCCCGGAACTCCAGGCAAAGCTGGAGGCAAAGGATCACGGGGTGCTT
CTGGCATGATGGGATCTCCCGGTGTTCCTGGGTCTCAAGGACTTCCTGGACCTCAAGGTG
GAATCGGCGTGCCAGGAATGAAAGGAAATCAAGGCAGCCCGGGTATGACCGGATACAAAG
GTGACCAAGGACCGAAAGGTTCTCTTGGATCCACTGGCCCTCAAGGATTGCAAGGCCCGC
AAGGAGAAGAAGGAAAGCGGGGACAAACAGGAGAGCCTGGATCACAAGGACCGGCTGGCC
CCAAGGGTTTGCAGGGAGCTCAAGGAAGCCGCGGTTTCCCTGGACAAAACGGCGTTTCTG
GACCGAAAGGGCAGCGAGGCGATCGTGGAAGACGGGGTGTACACGGACCAAAGGGGTCAT
CTGGTGATGTTGGAAGAGCCGGTGAACCTGGTGTCCCAGGAGCAAGAGGTCTAACAGGAA
GACAAGGAACAGAAGGTAAACAAGGCAAGCAAGGACCGCCGGGACCCACTGGTTTAGATG
GACGCCCGGGCGCTACTGGTCCTATGGGTGCGCGTGGTGCTCCTGGACAAATAGGATTCA
CTGGAGCTAAAGGCGCAGCGGGTGATGACGGCAAAACTGGAGAAAAGGGTTTAGAAGGTC
CGCCAGGCAGCCGTGGACAACCCGGCAAGGATGGTGAAATTGGTCCGCAAGGACAAATAG
GACCACCTGGCGAGCCAGGAGAACGTGGCGAGCAGGGCCGGCAAGGTGAACAGGGATTCC
AGGGATTGCAGGGTGTGCAGGGTCTGACAGGGGAGCCTGGATCACCTGGAGAACCGGGAG
TCCAAGGAGAGGTCGGTCCCAATGGTCCATCTGGAGAGAGAGGCGAACGCGGATATCCAG
GCGAAAGAGGTCCCGGCGGGGCTGATGGTAACCCTGGAGTTCGTGGCCCTGAGGGCATTG
CGGGAAAAGACGGATCTAAGGGTGCCCAAGGTGATGCCGGAAAGGAAGGCCAACGGGGTG
CCCCAGGAGCGCAAGGTCCAATAGGAAATAGAGGCCCGACAGGTCTAGAGGGTCCGAAAG
GTGACCGGGGAGATTTGGGAGAACCAGGAAGTCAAGGAGAGCCTGGCCCAGAGGGCCTAA
GAGGTTTAAACGGAGTACCAGGACCTCCAGGCCGTATCGGTTCCGAAGGCAAAAAGGGCG
ATGCTGGTCCACAAGGTTTGGAAGGCCAGCCAGGTCCAATAGGAAAGATAGGCGAAAGAG
GTGATCCCGGTCCACCTGGACAGCGAGGATACCCCGGAACTGCGGGACCGGTTGGTCAAT
CTGGAAAGAAAGGTGACTTGGGCGCAAGAGGACAAAAGGGTAATGAAGGTTCTCCTGGTC
AGCAAGGTCCGTCCGGCGGACCCGGGCCTCAGGGCGCAGCTGGTGTTACAGGACCGAAAG
GAGGCCGTGGGACAAGCGGTCCACCAGGACCTAGAGGATTTGTGGGAGCCACTGGGCGGC
CAGGATCTTCTGGTCCCCCTGGCGCACCTGGTCAGCAAGGTGTAGAGGGCGCAGTTGGAA
AATCAGGACCCAGAGGCGCACGAGGCCAGGATGGAAAACCAGGACAGCCAGGAGCCCCAG
GTGATCAAGGCGCCACCGGACTTCAAGGACCCCCTGGACCTTCTGGAGAACCAGGAGCAC
CGGTGGACCTGGCGTTCCTGGTCTACCTGGATCACAAGGGGCTGTCGGTCAACGTGGAGA
GCCTGGCGCACCTGGCGACCCTGGAAAGCAAGGTCTTATCGGCCCTGCCGGTGACAGAGG
ACCGCCCGGACAACTTGGAGCGCCAGGTCCTATGGGACCGCCTGGTGACATCGGGTCCGA
CCGGACCGCAGGGACTGACAGGACGCGACGGCTCACCCGGATCCAAAGGCGACAGCGGAC
CACCCGGTCCACGTGGTCAAGAAGGTAACATTGGTGCCCCCGGCCCGATTGGTTCTTCTG
GACCCGAAGGCAAGCAGGGACCCCGTGGCGAGCCCGGCCCAAGCGGCGTGCAAGGGACAC
CTGGCCCTCAGGGTGGCCGTGGAAATACGGGTTCTCAAGGCGTGCGCGGAGATAAGGGTA
GCTCAGGAGATCAAGGCGAACAAGGCCCGAAGGGACATCGTGGATTCCCCGGAATCCAAG
GCATTCCAGGCATTCAGGGTAAGACTGGAGATCCTGGTCTCAACGGACAAGCTGGCCCTC
AAGGCCCAACGGGTAAAACCGGGCCTCGTGGACCTGCTGGCAGTGATGGTCAACCTGGTT
CCCCTGGTCCTATGGGACCTTCTGGTAGCCGTGGTGGCCGTGGTGACGATGGTATGCAGG
GTCCCCAAGGCCCGCCCGGACCCCGTGGTGCCCCAGGTCCTCCTGGTGAAACCAAGGTTG
TCACAGTCTCAGGACTGTCATCGGAGAAGGGACCAAGCAGATATTACCAAGATGAGGGTA
TCGATGGCGCTACTGTCAGTCGCGACAATGAGGTAATGCTGGCATTGAAAGATATCAGCA
ATACGATTGACGTGATGAAATCGCCCCTTGGCGAAGATAAAAAATCGCCTAGCCGAAGCT
GCCACGATCTCTACCTCACTGCGCAACAGCTAGATGTCTCCATCAAGAACGGAGTGAAAT
GGGTTGATCCTAACGGCGGCTGCCCAGCGGACGCGATCGAGGTGTACTGCAATTTCGACA
CGAAAGAGACCTGCGTGTACCCGAACAATCCGTTCATCAACAACGCCACCCACGGTTACA
CCGAGTACGGCAGGACAGTCAACAAGCACGTTTTCATGAGCGACTTGAGGATGAATCGCA
TGAGCTACGACCCAGCTCCAGAAAGCAGGATCGCGGGTGCCAATTACGACAGCCAGCTGA
CTTTCTTGCGACTGCTCAGTTCCACAGCACGGCAGAACGTCACCTTCTGGTGTCAGAACA
TGATCGCCGTCAACAGCTTAGCTGACGACTCCACTGAAAGAGCCCTGAAGCTGATGGGCT
ACGGAGGCGAAGTGATCACGAGATACAGAACGATTCGCGACGAATGCGCGG
| Pfam |
Collagen (IPR008160) - T[51-103] 1.6E-8 - T[495-544] 1.5E-6 - T[555-604] 7.7E-7 - T[822-880] 1.3E-8 - T[942-998] 1.5E-7 - T[1059-1117] 3.0E-7 |
| Pfam |
Fib_collagen_C (IPR000885) - T[1149-1327] 1.8E-44 |
| SMART |
Fib_collagen_C (IPR000885) - T[1149-1337] 2.8E-18 |
| ProSiteProfiles |
Fib_collagen_C (IPR000885) - T[1150-1337] 42.351 |
| ProDom |
Fib_collagen_C (IPR000885) - T[1280-1336] 3.0E-6 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CO5A2_HUMAN | 55.523 % | 399 | 7.71E-117 |
| CO1A2_HUMAN | 45.837 % | 483 | 1.03E-147 |
| CO2A1_HUMAN | 53.291 % | 424 | 2.07E-125 |