- EST 'AHC0AAA226YH17_RM1' >
- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chr7.g42913.01.t
Possible name(s)
DMWD; SNRNP40; WDR20
Gene model
Location
chr7 [7,745,832 / 7,752,330]
Amino acid sequence
Length: 473
>Boschl.CG.Botznik2013.chr7.g42913.01.p
MISVIVLVSVATIGMVLQNSISVDFYSEYSLQDGYMRLIDYVTLEHKGAMKSYFGGLLCC
CWSPDGRYIVTGGEDDLVTVWSFYGRFVVARGYGHRSWISHVAFDPFLCLVPEEDEVLRW
YGSDSPALTRNSIRGRSLNRNYFKYETAADFKSTETXSVNAKSPVAKLQNLSRRNRTDST
VSKTSKISVAESIDARPRVSYRFGSAGQDAQLCLWELTDDVLFPRRRTTSMLRSYGCAHF
VRTEASPVKIANGKRDSSYSDSGSLGLNESQTVNGKGKHATSKGSPGSGKESSHSITRGF
TFFSKSSSKDSTSITEGKFATLAIGESPSKKDQAKSHKRNLSMPYFGTKNGSKSQSTVNG
VSRTEQSKESKGRLTWLSFQKDSIMTAGQDGCIQTWARPHKSEGSAPVTAQRKDLPRQSV
NSPTPSPKLSPVKGPPGTQRRLCRSLVFEYGLLAYGRCETCDWTIGPSDMTRD
Nucleotide sequence
Length: 1,422
>Boschl.CG.Botznik2013.chr7.g42913.01.t
CATGATATCGGTTATTGTCCTTGTAAGTGTGGCGACAATCGGTATGGTCCTGCAAAATTC
AATATCAGTCGACTTCTACTCTGAATATTCTTTACAGGATGGTTACATGCGGTTAATCGA
TTACGTGACGCTGGAACATAAAGGCGCCATGAAGAGTTATTTCGGCGGACTGCTGTGCTG
TTGCTGGAGTCCGGACGGGCGTTATATTGTCACTGGCGGCGAGGATGACTTGGTCACGGT
GTGGTCGTTTTACGGCCGATTTGTAGTAGCTAGAGGATATGGACATCGGTCTTGGATTAG
CCATGTAGCTTTTGACCCGTTTTTATGCCTCGTGCCCGAGGAAGACGAGGTTTTGCGTTG
GTACGGAAGCGATTCACCAGCTTTAACGCGTAATAGCATTAGGGGTAGGAGTTTAAATCG
TAATTATTTTAAATACGAGACTGCCGCCGATTTTAAATCGACCGAAACTANGTCTGTTAA
CGCGAAATCTCCGGTGGCGAAATTACAGAACCTATCGCGTAGAAACCGTACGGACAGCAC
CGTGTCTAAAACTTCGAAGATAAGCGTGGCGGAGTCAATAGACGCCAGACCAAGGGTGTC
ATATAGGTTCGGGTCTGCGGGACAGGACGCGCAGTTGTGCTTGTGGGAGTTGACTGACGA
TGTGTTGTTTCCGAGACGCAGAACGACGTCGATGTTGCGCAGCTATGGATGCGCGCATTT
TGTTAGGACCGAGGCTTCTCCGGTTAAAATTGCGAACGGTAAAAGAGACAGTTCTTATTC
GGACTCGGGCAGTTTGGGGTTGAACGAGTCTCAGACTGTGAACGGGAAAGGGAAGCACGC
GACATCAAAGGGGTCTCCGGGCAGCGGGAAGGAATCGAGTCATTCGATAACGAGAGGATT
CACGTTTTTTTCAAAGAGTTCGTCCAAGGACAGCACCAGTATAACGGAAGGAAAATTCGC
AACGTTGGCGATCGGCGAAAGTCCCTCCAAAAAGGATCAAGCCAAGTCGCACAAGCGCAA
TTTGAGCATGCCCTATTTCGGTACCAAGAACGGAAGTAAAAGTCAGTCCACTGTGAACGG
GGTTTCGCGGACGGAACAAAGTAAAGAGTCCAAGGGTCGTCTGACATGGCTAAGCTTCCA
GAAGGACAGTATCATGACCGCCGGCCAAGACGGCTGCATTCAGACGTGGGCGCGACCTCA
CAAGTCCGAGGGTTCAGCGCCAGTGACCGCCCAACGCAAGGACCTGCCCCGACAATCGGT
CAACTCGCCCACGCCCTCTCCAAAACTGTCGCCGGTCAAGGGCCCTCCCGGCACGCAGCG
TCGCCTTTGCCGTAGTTTGGTGTTTGAGTATGGTTTACTAGCTTACGGTCGATGCGAAAC
ATGTGACTGGACGATTGGGCCATCAGATATGACCAGGGACTA
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[32-109] 3.05E-16 - T[202-222] 3.05E-16 - T[365-397] 3.05E-16 |
| SMART |
WD40_repeat (IPR001680) - T[43-82] 4.6E-5 - T[180-216] 370.0 - T[360-397] 260.0 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[50-130] 10.654 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[50-82] 10.408 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| WDR20_HUMAN | 37 % | 194 | 1.31E-55 |
| DMWD_HUMAN | 67.105 % | 120 | 2.84E-29 |