- Transcript 'KH2012:KH.C5.240.v3....' >
- Transcript 'Haaura.CG.MTP2014.S8...' >
- Transcript 'Boleac.CG.SB_v3.S255...' >
- Transcript 'KH2012:KH.C1.439.v1....' >
- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chr7.g64240.02.t
Possible name(s)
LRP1; LRP4; LRP5
Gene model
Location
chr7 [1,583,405 / 1,598,504]
Amino acid sequence
Length: 1,737
>Boschl.CG.Botznik2013.chr7.g64240.02.p
MSTLWGFVCVFAAVQFGAEGSDSTECVDGSSRWYVGKINKTASGRTCQRWDVEKPHKPKH
VPHDGPHHNYCRNPDIDLRGTWCYTTDNDTRWEYCNITKCPDDSMVIWTSYNVSSQSSHL
LKLHADPEVVRKETDVNGSFSVSVMTSSNQPMTEYWALAANYRKKVLYFTDYKSEYFGVW
DMEKRTVTKYLEGMARGIEFIAFDWITNNLYWSDSYMKWVMAADSTLTHYTPVYRTAPDP
AYGIAIHSTKRFLFFSTHKHLGSKIIRTDLSGAGAKTMFSFPEVFDVSGMSVDYTDDRLY
WTDYTGYGGVIMSSRLDGSHKKKQNSRGGTIFWGVAPYSDYIYVSDVNKRFGITGDLHHT
IWILGKDSKQQIYSYKLGGKPRGVAVYSHNEEYSIDESSKMGGCDAESDCHHICLPRINA
TRVCGCSLGYHLDTDTNKCLPDHIPTELVKDNYMLVTDAGQGRMFQIPFASGSDKYSIVP
IGAKWKAETVAVDQSQQYLYWSDKTDSSVSRSSVDGSRYAKVASSYANSIIVDPHTGQLF
YSDNERDSIMISRGDGSASKTIVKPDPDVSSTSNIRMIAQDIKYKRIYWTDTYSKVGEGK
VMRCRYDGSQKKTVFDKLDWPHAIFIDYKTDRLYVVEAKQAVVYEVTLPSQSAISNTSIV
GNARNIFNLSSHIGRKTSITDLKIHEEFAYILNNKLDGLKRFSLKQGISSMASFGPSDFF
RITTLSVFNETFYSTYIKPVKNPCEKSLCREMCVALSDSESTCLCQDRKMDLGFECVEDS
TVKTDTLPPEPLNCPGNSEITLPTCSDSVLYSWNEPSWRDDTTASENLTLTSTLSPPSKL
GAGQSEITHSAQDEAGNVGYCRFTVTVRGMTMSTLWGFVCVFAAVQFGAEGSDSTECVDG
SSRWYVGKINKTASGRTCQRWDVEKPHKPKHVPHDGPHHNYCRNPDIDLRGTWCYTTDND
TRWEYCNITKCPDDSMVIWTSYNVSSQSSHLLKLHADPEVVRKETDVNGSFSVSVMTSSN
QPMTEYWALAANYRKKVLYFTDYKSEYFGVWDMEKRTVTKYLEGMARGIEFIAFDWITNN
LYWSDSYMKWVMAADSTLTHYTPVYRTAPDPAYGIAIHSTKRFLFFSTHKHLGSKIIRTD
LSGAGAKTMFSFPEVFDVSGMSVDYTDDRLYWTDYTGYGGVIMSSRLDGSHKKKQNSRGG
TIFWGVAPYSDYIYVSDVNKRFGITGDLHHTIWILGKDSKQQIYSYKLGGKPRGVAVYSH
NEEYSIDESSKMGGCDAESDCHHICLPRINATRVCGCSLGYHLDTDTNKCLPELVKDNYM
LVTDAGQGRMFQIPFASGSDKYSIVPIGAKWKAETVAVDQSQQYLYWSDKTDSSVSRSSV
DGSRYAKVASSYANSIIVDPHTGQLFYSDNERDSIMISRGDGSASKTIVKPDPDVSSTSN
IRMIAQDIKYKRIYWTDTYSKVGEGKVMRCRYDGSQKKTVFDKLDWPHAIFIDYKTDRLY
VVEAKQAVVYEVTLPSQSAISNTSIVGNARNIFNLSSHIGRKTSITDLKIHEEFAYILNN
KLDGLKRFSLKQGISSMASFGPSDFFRITTLSVFNETFYSTYIKPVKNPCEKSLCREMCV
ALSDSESTCLCQDRKMDLGFECVEDSTVKTDTLPPEPLNCPGNSEITLPTCSDSVLYSWN
EPSWRDDTTASENLTLTSTLSPPSKLGAGQSEITHSAQDEAGNVGYCRFTVTVRGMT
Nucleotide sequence
Length: 2,601
>Boschl.CG.Botznik2013.chr7.g64240.02.t
GATGTCGACTTTGTGGGGGTTCGTTTGCGTATTCGCCGCCGTTCAGTTCGGAGCGGAGGG
TTCGGATTCTACAGAATGCGTGGACGGTTCAAGTCGCTGGTACGTCGGAAAAATCAACAA
AACGGCTTCTGGTCGAACGTGCCAACGCTGGGACGTTGAAAAACCACACAAGCCGAAACA
TGTCCCCCACGACGGGCCGCATCACAACTACTGCAGAAACCCAGACATTGATTTACGCGG
GACTTGGTGTTACACGACAGACAACGATACGCGGTGGGAGTATTGTAACATCACAAAATG
TGCGGACGATTCTATGGTGATATGGACGAGCTACAACGTTTCCTCGCAAAGCAGCCATTT
GCTGAAACTGCAGGCTGACCCCGAAGTCGTGCGAAAAGAGACGGACGTCAACGGATCGTT
CAGCGTGTCGGTTATGACGTCATCAAACCAGCCCATGACAGAATACTGGGCGTTGGCCGC
GAATTACCGAAAGAAAGTTTTGTATTTCACCGATTACAGGTCCGAGTACTTCGGAGTTTG
GGACATGGAGAAAAGGACTGTGACGAAATACTTGGAAGGTATGGCACGGGGAATCGAATT
CATCGCGTTCGACTGGATAACTAACAATTTGTATTGGAGCGATTCTTACATGAAGTGGGT
GATGGCCGCTGACAGCACGTTGACTCACTACACCCCTGTATACCGGACTGCACCGGATCC
GGCCTACGGAATCGCGATACATTCAACCAAAAGGTTCCTATTTTTCTCCACACACAAACA
TCTAGGATCGAAAATCATCAGAACCGACCTGTCTGGTGCCGGCGCGAAGACGATGTTTTC
ATTTCCGGAGGTTTTCGACGTTTCTGGGATGTCGGTCGACTACACGGACGACAGACTTTA
TTGGACCGACTATACTGGATACGGCGGCGTTATAATGAGCTCGCGACTAGACGGCAGTCA
CAAGAAAAAACAGAATTCCAGAGGCGGGACGATATTTTGGGGAGTAGCCCCGTACTCGGA
TTACATTTACGTGAGCGACGTGAATAAACGATTCGGGATTACGGGCGATCTTCATCACAC
GATTTGGATCTTGGGCAAAGATTCCAAGCAGCAAATCTACAGCTATAAGTTGGGAGGGAA
GCCGCGAGGTGTCGCTGTTTACAGTCACAACGAAGAATATTCAATCGACGAAGCCTCAAA
AATGGGAGGATGCGATGCTGAGAGCGATTGCCATCACATTTGTCTGCCTCGAATCAACGC
GACTAGAGTGTGCGGATGTTCGTTGGGCTACCACCTGGACACAGACACGAACAAATGTCT
GCCAGAGTTGGTGAAGGACAACTACATGCTGGTGACGGACGCCGGTCAAGGAAGAATGTT
CCAGATTCCGTTCGCCAGCGGATCTGACAAATACAGCATCGTTCCAATCGGCGCAAAATG
GAAGGCAGAAACTGTTGCTGTGGACCAAAGCCAGCAATATTTGTATTGGTCTGATAAAAC
AGATTCATCCGTGAGTCGCTCGTCGGTAGACGGCAGCAGATACGCCAAAGTAGCTTCTTC
ATACGCTAACAGTATCATCGTGGACCCGCACACAGGGCAACTGTTTTACTCAGACAACGA
GCGAGACTCGATCATGATATCGAGAGGCGACGGCTCGGCTTCGAAAACCATCGTAAAACC
GGATCCAGATGTCAGCAGCACGTCGAATATTCGGATGATCGCGCAAGATATCAAATACAG
ACGCATCTACTGGACTGACACGTACTCTAAAGTGGGTGAGGGCAAAGTGATGAGATGCAG
ATACGACGGATCGCAGAAAAAGACGGTCTTCGACAAATTAGACTGGCCCCACGCTATTTT
CATCGACTACAAAGCGGATCGCTTGTACGTGGTGGAAGCGAAACAAGCTGTCGTTTATGA
GGTGACACTGCCATCGCAATCGGCCATCAGCAACACGTCTATCGTCGGAAACGCTCGAAA
TATCTTCAACTTGTCGAGTCATATTGGAAGGAAAACTTCTATCACAGGCTTGAAGATCCA
CGAGGAGTTCGCGTACATTTTGAACAACAAGCTGGACGGATTGAAGAGGTTTAGTTTGAA
GCAAGGAATCTCATCGATGGCCAGCTTTGGACCTTCCGATTTCTTTCGTATCACAACGCT
GTCGGTGTTCAACGAAACTTTTTATTCGACTTACATCGAGCCTGTGAAGAATCCGTGCGA
GAAATCCTTGTGTCGCGAGATGTGCGTCGCTCTGAGCGATTCCGAAAGCACGTGCCTCTG
CCAAGACCGAAAGATGGATCTAGGATTCGAGTGCGTGGAAGATTCCACTGTGAAAACTGA
CACTCTACCTCCCGAGCCTCTGAACTGTCCGGGCAATTCCGAGATCACCCTTCCGACTTG
CTCAGACTCCGTGCTCTACTCATGGAATGAACCTTCCTGGCGTGACGATACAACAGCCTC
TGAAAATCTTACTCTAACTTCAACTTTGAGTCCGCCTTCAAAATTAGGGGCCGGCCAATC
GGAAATCACGCACAGCGCCCAGGACGAGGCAGGAAACGTCGGATACTGCAGATTCACAGT
AACAGTCAGAGGTATGACGTA
| Gene3D |
Kringle_sf (IPR038178) - T[12-109] 5.5E-27 - T[879-980] 5.4E-27 |
| SMART |
Kringle (IPR000001) - T[24-102] 1.5E-24 - T[895-973] 1.5E-24 |
| SUPERFAMILY |
Kringle-like (IPR013806) - T[24-110] 3.62E-25 - T[895-981] 3.62E-25 |
| ProSiteProfiles |
Kringle (IPR000001) - T[25-100] 22.193 - T[896-971] 22.193 |
| Pfam |
Kringle (IPR000001) - T[26-100] 1.3E-18 - T[897-971] 1.3E-18 |
| ProSitePatterns |
Kringle_CS (IPR018056) - T[70-83] . - T[941-954] . |
| Gene3D |
6-blade_b-propeller_TolB-like (IPR011042) - T[110-441] 8.3E-43 - T[448-766] 1.2E-39 - T[981-1312] 8.3E-43 - T[1315-1632] 1.4E-39 |
| ProSiteProfiles |
LDLR_classB_rpt (IPR000033) - T[165-207] 4.912 - T[208-250] 7.302 - T[251-296] 5.353 - T[297-322] 8.044 - T[497-517] 8.253 - T[537-581] 6.838 - T[585-630] 11.92 - T[1036-1078] 4.912 - T[1079-1121] 7.302 - T[1122-1167] 5.353 - T[1168-1193] 8.044 - T[1363-1383] 8.253 - T[1403-1447] 6.838 - T[1451-1496] 11.92 |
| SMART |
LDLR_classB_rpt (IPR000033) - T[188-230] 2.7 - T[231-275] 50.0 - T[276-321] 7.3E-5 - T[477-519] 23.0 - T[520-559] 21.0 - T[560-611] 0.062 - T[1059-1101] 2.7 - T[1102-1146] 50.0 - T[1147-1192] 7.3E-5 - T[1343-1385] 23.0 - T[1386-1425] 21.0 - T[1426-1477] 0.062 |
| SMART |
EGF-like_dom (IPR000742) - T[403-440] 0.74 - T[743-777] 73.0 - T[1274-1311] 0.74 - T[1609-1643] 73.0 |
| ProSiteProfiles |
HYR_dom (IPR003410) - T[784-869] 19.717 - T[1650-1735] 19.717 |
| Pfam |
HYR_dom (IPR003410) - T[784-867] 7.9E-11 - T[1650-1733] 7.9E-11 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LRP1_HUMAN | 19.27 % | 107 | 5.07E-23 |
| LRP4_HUMAN | 21.536 % | 120 | 6.49E-27 |
| LRP6_HUMAN | 20.858 % | 99 | 1.53E-20 |