- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chr8.g08885.01.t
Possible name(s)
PCDHB11; PCDHB16; PCDHB6
Gene model
Location
chr8 [1,945,600 / 1,948,731]
Amino acid sequence
Length: 318
>Boschl.CG.Botznik2013.chr8.g08885.01.p
MKVGNKVVIPGRKWLKIDRLSGVISVNEPVDRETECGEDFELECTITVQTAMLPQNHFRL
QNFELIVTDVNDHSPKFPTAPRSGIFQLNISEDTPVQSTINIDQFMATDEDMNQNAVIHY
TMTRNDHFVVNEYEDDTGAQHLQLSLQSPLDYENTPQFDVDLIATDGGSPIKRSGQLSLR
INVIDVNDNAPVFDESVYDLRLRENLPVGHVIATVHASDLDKGLFGEVRYFVPSTGNSIS
ARRFVSVDRRSGEVKLRRSPDREEKKKVKIILAAEDSPGLTEKKIGRTVLMIHITDVNDN
APQIDVNVIIRGQNDAGW
Nucleotide sequence
Length: 957
>Boschl.CG.Botznik2013.chr8.g08885.01.t
AATGAAAGTCGGAAATAAAGTGGTCATACCCGGTAGGAAATGGCTGAAAATTGACCGCCT
TTCTGGAGTTATATCTGTAAATGAGCCGGTGGACAGAGAGACTGAATGCGGTGAGGATTT
TGAGCTGGAATGTACAATCACCGTACAGACTGCGATGCTGCCACAAAATCATTTCCGTCT
ACAAAATTTTGAGCTGATTGTCACCGACGTGAACGACCATTCCCCAAAATTTCCAACTGC
ACCACGAAGTGGAATCTTCCAGTTGAACATTAGCGAGGATACGCCCGTGCAGTCAACGAT
CAATATTGACCAGTTCATGGCTACCGACGAGGATATGGATCAAAATGCGGTAATTCACTA
CACCATGACAAGAAACGATCATTTTGTGGTGAACGAATATGAAGATGACACAGGGGCTCA
ACATCTGCAATTGAGTCTTCAGTCTCCGTTAGACTACGAAAACACCCCGCAATTTGATGT
GGATCTGATAGCGACGGATGGTGGATCTCCCATCAAACGTTCCGGTCAGTTATCTCTTCG
CATCAACGTCATCGACGTTAACGACAACGCCCCTGTTTTTGATGAATCGGTTTATGATTT
GAGACTTAGAGAAAATCTCCCAGTTGGACATGTGATAGCGACCGTCCACGCTAGCGATCT
GGACAAAGGACTCTTCGGTGAAGTACGGTACTTTGTTCCAAGCACCGGGAATTCGATATC
TGCGCGCAGATTCGTGTCTGTCGATCGTAGGTCCGGGGAAGTGAAGCTACGACGCTCACC
AGACAGAGAGGAAAAGAAAAGGGTGAAAATAATTCTCGCTGCTGAAGATTCGCCAGGACT
TACGGAAAAGAAAATCGGAAGGACCGTTCTCATGATACATATCACAGACGTCAACGATAA
TGCTCCTCAGATCGATGTCAATGTTATCATCCGAGGTCAAAACGATGCAGGTTGGTG
| SMART |
Cadherin (IPR002126) - T[1-75] 1.1 - T[105-191] 6.7E-19 - T[215-302] 1.4E-13 |
| PRINTS |
Cadherin (IPR002126) - T[13-32] 9.8E-25 - T[157-169] 9.8E-25 - T[172-191] 9.8E-25 - T[191-204] 9.8E-25 - T[250-276] 9.8E-25 - T[286-303] 9.8E-25 |
| SUPERFAMILY |
Cadherin-like (IPR015919) - T[85-193] 7.0E-15 - T[181-310] 2.51E-25 |
| Pfam |
Cadherin (IPR002126) - T[88-183] 8.6E-11 - T[198-294] 6.4E-10 |
| ProSitePatterns |
Cadherin_CS (IPR020894) - T[181-191] . - T[292-302] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PCDBB_HUMAN | 36.455 % | 168 | 8.2E-47 |
| PCDBG_HUMAN | 34.564 % | 163 | 3.6E-45 |
| PCDB6_HUMAN | 35.065 % | 160 | 3.64E-44 |