- Transcript 'Cisavi.CG.ENS81.R166...' >
- Transcript 'Harore.CG.MTP2014.S1...' >
- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chr8.g68031.01.t
Possible name(s)
THBS1; THBS2; THBS4
Gene model
Location
chr8 [91,275 / 96,503]
Amino acid sequence
Length: 667
>Boschl.CG.Botznik2013.chr8.g68031.01.p
MRTRECNNPLPENGGKDCGGDKSEVEMCNEHPCPIDTCALESPCYPGVTCTPSDDGSYEC
GNCQSGMQGDGKNCTDINECKLVPDACFNYEGRHRCHNYPGGYSCMPCPTGHKGDTPAGT
GVEYAVDHKQTCEVVNPCTDGSNPCPTNAECVFLGIAISPPYTCKCHPGFSSCDACGGLV
CAEDSDLDGIPDSEVTCTKDGVNATCARDNCRTLPNSGQENADGDELGDACDTDKDNDGI
LEPKDNCPLIYNPSQHDSDRDLVGDVCDNCPFLRNEGQVDTDNDGTGDACDNDIDGDGIL
NEDDNCVYVSNVDQLDSDGDFVGDVCDNCKDIANADQADADSDRVGDACDTDEDRDNDGI
QDDLDNCPFIANSGQADHDGDGLGDACDXDDDNDGVPDGRDNCRLISNPDQXDSNGNGRG
DVCENDFDGDGVSDYEDACMDNAQITKTDFTKFDKVKLDPRGVAQVDPNWVVRHRGKEIV
QTKNCDPGLAIGNDMFAGVDFEGTFFINTNKDDDFAGFVFGYQSSKRFYVLMWKQVTQQY
WEPYPRQAHGYAGLQLKVVESVTGPGEHLRNALWHTGDTADQVRTLWTDEKFQGWKDYTA
YRWMLNHRPSTGEIRIKMYEGRDLLVDSGRVVDKTYAGGRIGMFVFSQEMVFYSDMDYKC
NDSSMQS
Nucleotide sequence
Length: 2,004
>Boschl.CG.Botznik2013.chr8.g68031.01.t
TGCGCACGCGCGAGTGCAACAACCCACTTCCGGAAAACGGCGGTAAAGACTGTGGTGGTG
ACAAATCCGAGGTGGAGATGTGCAACGAGCATCCTTGCCCGATAGGTACGTGCGCATTGG
AGAGCCCCTGTTATCCGGGAGTCACATGCACGCCATCTGACGACGGTTCGTACGAGTGTG
GAAATTGCCAGTCGGGAATGCAAGGCGATGGAAAAAACTGCACTGATATTAACGAGGGCA
AATTGGTGCCAGACGCTTGTTTCAACTACGAAGGCAGACACAGGTGTCACAATTATCCAG
GCGGATATTCCTGCATGCCTTGCCCGACCGGTCACAAAGGTGATACCCCTGCAGGCACTG
GCGTCGAGTATGCTGTTGATCACAAGCAAACGTGCGAGGTTGTGAACCCATGCACCGACG
GATCTAATCCATGTCCCACAAATGCCGAGTGCGTCTTTCTGGGTATTGCGATTAGCCCCC
CGTACACGTGCAAGGGTCATCCCGGATTTTCGTCCTGCGACGCATGCGGCGGATTAGTAT
GCGCGGAAGACTCAGACTTAGACGGTATACCTGATTCGGAGGTCACGTGTACTAAGGATG
GAGTCAATGCCACCTGTGCCAGAGACAATTGTAGAACGTTACCGAACAGTGGCCAGGAAA
ATGCGGACGGAGACGAATTGGGAGATGCTTGCGACACGGATAAAGACAACGATGGCATTC
TCGAGCCCAAGGATAACTGTCCTCTGATCTACAACCCATCTCAACACGATTCCGATCGTG
ACCTAGTCGGCGATGTGTGCGACAACTGTCCGTTCCTGCGAAACGAAGGCCAAGTGGACA
CGGACAACGACGGAACGGGCGACGCTTGCGACAACGATATTGATGGCGATGGTATTCTAA
ATGAGGACGACAACTGCGTATACGTGAGCAATGTAGATCAGCTTGATAGCGATGGCGATT
TTGTTGGGGATGTGTGCGACAACTGCAAAGACATAGCGAATGCTGATCAGGCAGACGCAG
ACTCTGATCGCGTTGGCGACGCATGCGATACGGACGAAGATAGAGACAACGATGGCATTC
AAGATGACTTGGACAACTGTCCTTTCATAGCGAACAGTGGCCAGGCAGACCACGACGGCG
ATGGTTTGGGAGATGCTTGCGACNCAGATGATGACAACGACGGAGTACCGGATGGCCGTG
ATAACTGTCGTCTTATTTCTAACCCTGATCAAAGNGACTCTAATGGAAATGGACGCGGCG
ATGTGTGTGAAAATGATTTTGACGGCGACGGAGTCTCTGACTACGAAGATGCGTGCATGG
ATAACGCTCAAATTACTAAAACCGACTTTACGAAATTTGACAAAGTAAAATTAGATCCGC
GAGGTGTCGCGCAAGTAGATCCGAACTGGGTGGTCCGACACAGAGGGAAGGAAATAGTAC
AGACGAAAAATTGTGATCCTGGCCTAGCTATCGGAAACGATATGTTTGCTGGAGTTGATT
TCGAAGGCACCTTCTTCATAAATACGAATAAAGACGACGATTTCGCTGGTTTTGTTTTCG
GTTACCAATCTTCGAAACGTTTCTACGTACTGATGTGGAAACAAGTTACGCAACAATACT
GGGAACCTTATCCAAGACAAGCCCATGGTTACGCTGGCTTACAGCTGAAGGTCGTGGAAT
CAGTAACAGGCCCAGGCGAGCACCTGAGGAATGCACTTTGGCATACAGGCGACACTGCTG
ATCAGGTCAGAACGCTATGGACCGACGAAAAATTCCAAGGCTGGAAGGACTATACAGCGT
ATAGGTGGATGTTAAACCACCGACCTTCTACTGGAGAAATACGGATCAAAATGTACGAGG
GAAGAGATCTGCTTGTCGACTCGGGTCGAGTTGTCGACAAGACATACGCAGGCGGGAGAA
TAGGAATGTTCGTATTTTCACAAGAAATGGTTTTCTATTCAGACATGGATTATAAATGCA
ATGGTTCTTCAATGCAATCGTAAC
| Gene3D |
TSP1_rpt_sf (IPR036383) - T[1-33] 4.9E-7 |
| PANTHER |
Thrombospondin (IPR037349) - T[8-665] 0.0 |
| ProSiteProfiles |
EGF-like_dom (IPR000742) - T[34-75] 9.435 - T[134-174] 11.129 |
| SMART |
EGF-like_Ca-bd_dom (IPR001881) - T[34-75] 0.025 - T[76-133] 1.0E-4 |
| SMART |
EGF-like_dom (IPR000742) - T[37-75] 0.027 - T[79-133] 31.0 - T[137-177] 3.7 |
| Pfam |
EGF-like_Ca-bd_dom (IPR001881) - T[76-113] 2.0E-6 |
| Gene3D |
TSP_type-3_rpt (IPR028974) - T[172-267] 5.0E-22 - T[268-326] 1.8E-20 - T[327-448] 3.4E-43 |
| SUPERFAMILY |
TSP_type-3_rpt (IPR028974) - T[182-268] 4.71E-12 - T[244-327] 1.44E-17 - T[325-446] 1.83E-34 |
| ProSiteProfiles |
Thrombospondin_3_rpt (IPR017897) - T[183-219] 11.557 - T[220-255] 16.385 - T[256-278] 10.511 - T[279-314] 17.267 - T[315-337] 10.772 - T[338-375] 15.88 - T[376-411] 17.625 - T[412-447] 14.025 |
| Pfam |
Thrombospondin_3-like_rpt (IPR003367) - T[222-255] 1.9E-9 - T[256-278] 0.0011 - T[280-314] 8.4E-11 - T[339-375] 1.8E-12 - T[377-411] 1.2E-9 - T[413-446] 2.2E-10 |
| SUPERFAMILY |
ConA-like_dom_sf (IPR013320) - T[448-662] 1.33E-97 |
| ProSiteProfiles |
Thrombospondin_C (IPR008859) - T[451-665] 93.778 |
| Pfam |
Thrombospondin_C (IPR008859) - T[465-662] 1.2E-92 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TSP1_HUMAN | 61.237 % | 774 | 0 |
| TSP2_HUMAN | 58.22 % | 729 | 0 |
| TSP4_HUMAN | 50 % | 573 | 0 |