Aniseed - Transcript Card

Transcript Model

Transcript Id

Boschl.CG.Botznik2013.chr9.g21834.01.t

Possible name(s)

TRMT1; TRMT1L

Gene model

Boschl.CG.Botznik2013.chr9.g21834

Location

chr9 [19,779,397 / 19,780,771]

Sequences

Amino acid sequence

Length: 457

>Boschl.CG.Botznik2013.chr9.g21834.01.p
MTSCVLKELGTDFEFTHKFQQKLGNQWNTAKTLSTPRALSVFALSQVIEEYNGIGMTALS
CVEAVPGLGIAGKLWKQEFQDKISVVVNTIEETPENDVGRNGDAKSCSDIKYACEEPNAL
LHSGKIFNFIYLEAYGNCVRYLESACHVISHRGVLCIVSTDLSTLYNKSPDRVPRIYHGH
TMKNEYMKETAVRLILANLARAASRWDRGFHVILCRADENCVVIVARILKGATHANRSLD
FVKKVAHCRQCHFRAVLDETWHFVPSADKIACFCKDIDPASSGYILSPIVCLGPMYTGPI
FDPGFIFDMRERAIKTSPRLKTASILQSMLMECCCCESDADEVALTKLLSGNLESAAGAG
KDSDEPAAKKLKTDQSFKEFAVKYSNLDFPVLFLLAQTHTRRGSNVPKITNVIGRLRECG
FRASRTTFDPRGIRTSASVREFRRIIDEILKATPKSG

Nucleotide sequence

Length: 1,374

>Boschl.CG.Botznik2013.chr9.g21834.01.t
TGACGTCGTGCGTTTTGAAAGAGCTGGGCACGGACTTTGAGTTCACACACAAATTTCAAC
AAAAACTAGGAAATCAATGGAACACGGCGAAAACGTTATCGACGCCTCGTGCGTTGTCAG
TGTTTGCCTTATCTCAAGTGATCGAGGAGTATAACGGAATCGGGATGACCGCTTTATCAT
GTGTGGAAGCTGTTCCCGGGTTAGGTATCGCGGGTAAGCTGTGGAAACAAGAATTTCAAG
ATAAGATCAGTGTTGTCGTGAACACTATCGAAGAGACTCCAGAGAATGACGTAGGCCGTA
ATGGTGACGCTAAATCGTGTAGCGATATCAAGTATGCCTGCGAAGAACCGAATGCGCTAT
TGCATTCCGGCAAGATATTCAATTTCATCTACCTAGAAGCATATGGGAATTGTGTGAGAT
ACCTCGAATCGGCGTGTCACGTTATCAGCCATCGTGGCGTTTTGTGTATTGTATCCACCG
ATCTGTCTACACTTTACAACAAAAGTCCGGACAGAGTACCGCGGATATATCACGGGCACA
CTATGAAGAACGAATACATGAAAGAAACGGCCGTTCGACTTATACTGGCTAATCTGGCCC
GTGCCGCAAGCCGCTGGGATCGGGGGTTTCATGTGATTTTGTGTCGCGCCGATGAAAACT
GCGTGGTCATCGTGGCGAGGATATTAAAAGGCGCCACCCACGCCAATCGCTCGTTGGATT
TCGTCAAAAAGGTGGCGCACTGTAGACAATGTCATTTTCGAGCCGTTCTTGACGAGACGT
GGCATTTTGTGCCGAGCGCGGACAAGATAGCGTGCTTCTGTAAAGATATCGATCCCGCAT
CATCGGGCTATATCTTATCGCCTATCGTGTGTTTAGGTCCGATGTACACCGGCCCGATTT
TTGATCCTGGCTTTATATTCGACATGAGAGAACGCGCCATCAAAACAAGCCCGCGGCTTA
AGACCGCGTCGATATTGCAAAGTATGTTGATGGAATGCTGCTGCTGTGAATCTGATGCCG
ATGAGGTTGCTCTCACAAAATTGCTCAGCGGTAATCTTGAAAGCGCAGCCGGCGCTGGTA
AGGACTCTGACGAGCCCGCGGCCAAGAAGTTGAAAACCGATCAAAGTTTTAAAGAGTTTG
CTGTAAAGTACAGCAACTTGGACTTTCCTGTGTTGTTTCTACTCGCTCAAACGCACACAA
GGCGCGGCAGTAACGTGCCAAAAATCACGAATGTTATCGGAAGGCTGCGAGAATGCGGGT
TTAGAGCCAGCAGAACAACCTTCGACCCCCGCGGAATACGCACTTCCGCGTCTGTCCGTG
AATTTAGGCGTATAATCGACGAAATCTTGAAAGCGACGCCGAAATCGGGTTGAG

InterProScan

ProSiteProfiles	Trm1 (IPR002905) - T[1-446] 42.472
PANTHER	Trm1 (IPR002905) - T[5-100] 9.1E-66 - T[103-450] 9.1E-66
Pfam	Trm1 (IPR002905) - T[36-331] 2.3E-32 - T[386-445] 2.2E-5
SUPERFAMILY	SAM-dependent_MTases (IPR029063) - T[57-337] 1.83E-40 - T[387-446] 1.83E-40

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
TRM1L_HUMAN	26.025 %	129	5.22E-32