- Transcript 'KH2012:KH.L4.55.v1.A...' >
- Transcript 'Phmamm.CG.MTP2014.S3...' >
- Transcript 'Haaura.CG.MTP2014.S1...' >
- Transcript 'KH2012:KH.C7.190.v2....' >
- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chr9.g44797.01.t
Possible name(s)
NR1H2; NR1H3; NR1H4
Gene model
Location
chr9 [16,160,442 / 16,172,136]
Amino acid sequence
Length: 413
>Boschl.CG.Botznik2013.chr9.g44797.01.p
MNICDASGKKAEIKSERLDSNEKKRKNTSASEKRSDSRPIVRKRQPEDICAVCGDRASGY
HYNALTCEGCKGFFRRSITNKTSYKQGCKQGGNCEMDTYTRRKCPHCRFKKCKEVGMLEE
CLLTEIQCRSKRIRRQQRKQQQQRTDEDHPKSEHSSPSTGLTSPEQSSAVSSPSGSDGSQ
NSDYQTTLALTDDEVKLIDTVAAAFKKYQINPEIVRKWEEYINKESKTTCRLSXITTVHV
QVLVEYAKTIPGFLLLEYPDQIALLKGSIFEAMLIRNSCGFHHLRRAINKSAILEEVGVE
PRKFEALLDFFNSIGKLGMDEIEYGLLIAIVIFNSDYDFVKNKEIIDEYQDLYLSALAKY
SMARTPTRTSIFPRILAMLTEIRSLSHNNAEIVSSWKRRGALTPLLCEIWDLE
Nucleotide sequence
Length: 1,242
>Boschl.CG.Botznik2013.chr9.g44797.01.t
AATGAATATATGCGACGCGTCTGGCAAAAAAGCGGAAATTAAATCGGAAAGGCTTGACAG
CAACGAGAAAAAACGCAAGAATACAAGTGCATCAGAGAAAAGATCGGACTCTCGACCAAT
GGTGCGTAAAAGGCAACCCGAGGATATCTGTGCGGTGTGTGGAGATCGGGCGTCTGGTTA
TCATTACAACGCGTTGACTTGTGAGGGCTGCAAAGGATTTTTCAGAAGATCAATCACAAA
CAAGACAAGTTACAAACAAGGGTGTAAACAAGGAGGGAATTGCGAAATGGACACGTACAC
AAGACGGAAATGCCCGCATTGCAGATTCAAAAAGTGCAAGGAAGTTGGGATGCTTGAAGA
AGGCCTTCTGACTGAAATCCAGTGCCGATCCAAACGCATCAGGAGGCAGCAACGGAAGCA
ACAGCAACAGAGAACGGACGAAGATCATCCAAAATCTGAGCATTCCTCTCCCAGTACCGG
CTTAACGTCGCCAGAACAATCATCTGCTGTGTCATCACCCAGCGGATCGGATGGTTCTCA
GAATAGCGATTATCAGACCACGCTCGCGTTAACCGACGACGAAGTGAAACTTATCGATAC
CGTGGCCGCCGCCTTCAAGAAATACCAGATAAATCCGGAAATAGTGCGCAAATGGGAGGA
ATACATCAACAAAGAATCGAAAACTACATGCAGACTTTCGGANATTACGACAGTTCACGT
GCAGGTCTTGGTTGAATATGCAAAGACCATACCGGGATTTTTATTGCTGGAATACCCGGA
CCAGATAGCTTTGCTCAAGGGAAGCATTTTCGAAGCGATGCTGATTAGAAACTCATGCGG
CTTTCATCATCTCAGACGAGCCATCAATAAGTCTGCCATACTCGAGGAAGTAGGCGTTGA
ACCAAGAAAGTTTGAAGCTTTGCTCGACTTCTTCAATTCTATTGGTAAGCTTGGGATGGA
CGAAATTGAGTACGGCTTGCTCATCGCCATTGTCATCTTCAATTCCGATTATGATTTCGT
GAAAAACAAAGAGATCATCGACGAATATCAAGACCTGTACTTAAGTGCGCTGGCGAAGTA
CAGCATGGCTAGAACTCCGACGCGGACGTCGATATTTCCCCGAATATTAGCCATGTTGAC
AGAGATCAGATCCCTCAGTCATAACAACGCAGAAATCGTCTCTTCGTGGAAAAGGCGAGG
CGCCTTGACACCCCTACTCTGCGAAATATGGGATTTGGAATA
| Gene3D |
Znf_NHR/GATA (IPR013088) - T[33-126] 5.1E-29 |
| SMART |
Znf_hrmn_rcpt (IPR001628) - T[47-120] 5.0E-35 |
| ProSiteProfiles |
Znf_hrmn_rcpt (IPR001628) - T[47-124] 18.622 |
| Pfam |
Znf_hrmn_rcpt (IPR001628) - T[49-118] 8.5E-27 |
| PRINTS |
Znf_hrmn_rcpt (IPR001628) - T[50-66] 7.3E-18 - T[66-81] 7.3E-18 - T[101-109] 7.3E-18 - T[109-117] 7.3E-18 |
| ProSitePatterns |
Znf_hrmn_rcpt (IPR001628) - T[50-76] . |
| PRINTS |
Nuclear_hrmn_rcpt (IPR001723) - T[113-123] 3.9E-20 - T[235-256] 3.9E-20 - T[256-272] 3.9E-20 - T[317-332] 3.9E-20 - T[374-391] 3.9E-20 |
| SUPERFAMILY |
NHR_like_dom_sf (IPR035500) - T[190-411] 6.82E-46 |
| Pfam |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[233-392] 1.9E-17 |
| SMART |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[234-386] 1.8E-24 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| NR1H3_HUMAN | 33.251 % | 215 | 2.29E-65 |
| NR1H2_HUMAN | 35.602 % | 214 | 1.02E-64 |
| NR1H4_HUMAN | 39.759 % | 278 | 3.22E-89 |