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  1. Transcript 'Boschl.CG.Botznik201...'
  2. Transcript 'Haaura.CG.MTP2014.S1...'
  3. Transcript 'Harore.CG.MTP2014.S1...'
  4. Transcript 'Phmamm.CG.MTP2014.S2...'
  5. Transcript 'Boschl.CG.Botznik201...'

Transcript Model

Transcript Id

Boschl.CG.Botznik2013.chr9.g44797.01.t

Possible name(s)

NR1H2; NR1H3; NR1H4

Location

chr9 [16,160,442 / 16,172,136]

Sequences

Amino acid sequence

Length: 413

>Boschl.CG.Botznik2013.chr9.g44797.01.p
MNICDASGKKAEIKSERLDSNEKKRKNTSASEKRSDSRPIVRKRQPEDICAVCGDRASGY
HYNALTCEGCKGFFRRSITNKTSYKQGCKQGGNCEMDTYTRRKCPHCRFKKCKEVGMLEE
CLLTEIQCRSKRIRRQQRKQQQQRTDEDHPKSEHSSPSTGLTSPEQSSAVSSPSGSDGSQ
NSDYQTTLALTDDEVKLIDTVAAAFKKYQINPEIVRKWEEYINKESKTTCRLSXITTVHV
QVLVEYAKTIPGFLLLEYPDQIALLKGSIFEAMLIRNSCGFHHLRRAINKSAILEEVGVE
PRKFEALLDFFNSIGKLGMDEIEYGLLIAIVIFNSDYDFVKNKEIIDEYQDLYLSALAKY
SMARTPTRTSIFPRILAMLTEIRSLSHNNAEIVSSWKRRGALTPLLCEIWDLE

Nucleotide sequence

Length: 1,242

>Boschl.CG.Botznik2013.chr9.g44797.01.t
AATGAATATATGCGACGCGTCTGGCAAAAAAGCGGAAATTAAATCGGAAAGGCTTGACAG
CAACGAGAAAAAACGCAAGAATACAAGTGCATCAGAGAAAAGATCGGACTCTCGACCAAT
GGTGCGTAAAAGGCAACCCGAGGATATCTGTGCGGTGTGTGGAGATCGGGCGTCTGGTTA
TCATTACAACGCGTTGACTTGTGAGGGCTGCAAAGGATTTTTCAGAAGATCAATCACAAA
CAAGACAAGTTACAAACAAGGGTGTAAACAAGGAGGGAATTGCGAAATGGACACGTACAC
AAGACGGAAATGCCCGCATTGCAGATTCAAAAAGTGCAAGGAAGTTGGGATGCTTGAAGA
AGGCCTTCTGACTGAAATCCAGTGCCGATCCAAACGCATCAGGAGGCAGCAACGGAAGCA
ACAGCAACAGAGAACGGACGAAGATCATCCAAAATCTGAGCATTCCTCTCCCAGTACCGG
CTTAACGTCGCCAGAACAATCATCTGCTGTGTCATCACCCAGCGGATCGGATGGTTCTCA
GAATAGCGATTATCAGACCACGCTCGCGTTAACCGACGACGAAGTGAAACTTATCGATAC
CGTGGCCGCCGCCTTCAAGAAATACCAGATAAATCCGGAAATAGTGCGCAAATGGGAGGA
ATACATCAACAAAGAATCGAAAACTACATGCAGACTTTCGGANATTACGACAGTTCACGT
GCAGGTCTTGGTTGAATATGCAAAGACCATACCGGGATTTTTATTGCTGGAATACCCGGA
CCAGATAGCTTTGCTCAAGGGAAGCATTTTCGAAGCGATGCTGATTAGAAACTCATGCGG
CTTTCATCATCTCAGACGAGCCATCAATAAGTCTGCCATACTCGAGGAAGTAGGCGTTGA
ACCAAGAAAGTTTGAAGCTTTGCTCGACTTCTTCAATTCTATTGGTAAGCTTGGGATGGA
CGAAATTGAGTACGGCTTGCTCATCGCCATTGTCATCTTCAATTCCGATTATGATTTCGT
GAAAAACAAAGAGATCATCGACGAATATCAAGACCTGTACTTAAGTGCGCTGGCGAAGTA
CAGCATGGCTAGAACTCCGACGCGGACGTCGATATTTCCCCGAATATTAGCCATGTTGAC
AGAGATCAGATCCCTCAGTCATAACAACGCAGAAATCGTCTCTTCGTGGAAAAGGCGAGG
CGCCTTGACACCCCTACTCTGCGAAATATGGGATTTGGAATA

InterProScan

Gene3D
Znf_NHR/GATA (IPR013088) - T[33-126] 5.1E-29
SMART
Znf_hrmn_rcpt (IPR001628) - T[47-120] 5.0E-35
ProSiteProfiles
Znf_hrmn_rcpt (IPR001628) - T[47-124] 18.622
Pfam
Znf_hrmn_rcpt (IPR001628) - T[49-118] 8.5E-27
PRINTS
Znf_hrmn_rcpt (IPR001628) - T[50-66] 7.3E-18 - T[66-81] 7.3E-18 - T[101-109] 7.3E-18 - T[109-117] 7.3E-18
ProSitePatterns
Znf_hrmn_rcpt (IPR001628) - T[50-76] .
PRINTS
Nuclear_hrmn_rcpt (IPR001723) - T[113-123] 3.9E-20 - T[235-256] 3.9E-20 - T[256-272] 3.9E-20 - T[317-332] 3.9E-20 - T[374-391] 3.9E-20
SUPERFAMILY
NHR_like_dom_sf (IPR035500) - T[190-411] 6.82E-46
Pfam
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[233-392] 1.9E-17
SMART
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[234-386] 1.8E-24

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
NR1H3_HUMAN 33.251 % 215 2.29E-65
NR1H2_HUMAN 35.602 % 214 1.02E-64
NR1H4_HUMAN 39.759 % 278 3.22E-89





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