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- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chr9.g45238.01.t
Possible name(s)
SGSM3; TBC1D2; TBC1D2B
Gene model
Location
chr9 [16,766,673 / 16,768,848]
Amino acid sequence
Length: 724
>Boschl.CG.Botznik2013.chr9.g45238.01.p
MHPDXILXKIADDEEHGLQTDYWYDEFGFIVDEEDGAEPNSNKVRGIPLVDDPQHKLKWQ
AHLEFSMNSDVRDXTWDKIGHTIPKSXRLRDXVRSGIPHSLRAEVWPRLSGALKKKMDSN
VTYKEIIQASSEGSASTAKAIEKDLLRTIPNNACFSNMDSMGVXRLRRILKXLAWLYPDI
GYCQGXGVIVAHLLLFMEEEDTFWMMSSIIEDLVPVSYFSTNLLGAHADQRVLXQLLAQF
LPNVXDLLQRHDIELAXITLSWFVTLMAGVIHPKLLXRVWDCFFMDGSVVLFKVAIGMLK
MREKSLIXVDNPADIFNNLSDISNXLDXAEILLQNADXCAGSLTDVILXANRKKHVAFLM
XENGITNXQXVVPRKQGLKRRNYXGKFLFGTXVDNQFEYAKXKNIKQTELVSDLRNAILX
IMKHFQXCDXXDXVFKPDYXIESHQXDRENFMNVSLKRRQRXKALLKFDRHDDDELGFQK
XDIITIVNMXXEHCWIGELNXRXGWFPAKYVQLIDERSKVYSDXGDDAVNNTITDLVXGG
LCPAISVIFEHXLKHSVMLGSACXPWLFIEEAANYEVEKDFNSVFSRLVLCKTFRLDEDG
KVLTPEELLYRCVQAVNHTHNSAHAQMDVKFRSLVCLGLNEQVLHLWLEILCSCXQIVTK
WYHPWSFXMSPGWVQLKCELRILSQYTFYLSQDWELQKKKESKESLKTGVRDMLVKHHLF
SWDL
Nucleotide sequence
Length: 2,175
>Boschl.CG.Botznik2013.chr9.g45238.01.t
GATGCATCCGGACCCNATACTANGGAAAATAGCTGATGATGAAGAGCATGGCTTGCAGAC
AGATTATTGGTACGACGAATTTGGATTTATTGTAGATGAGGAAGATGGAGCTGAGCCGAA
CAGCAACAAAGTTCGAGGCATACCTCTCGTCGACGACCCACAACACAAACTAAAATGGCA
GGCGCACTTAGAATTCAGCATGAATTCCGATGTCAGAGATNTAACGTGGGACAAAATTGG
CCATACAATTCCAAAGTCCNATCGTTTACGAGACTTNGTGCGCAGCGGTATTCCACACAG
TCTCAGAGCTGAGGTTTGGCCGCGACTGTCAGGCGCTTTGAAGAAAAAAATGGACAGTAA
CGTCACTTATAAAGAAATAATACAAGCCAGCTCGGAAGGGAGCGCGTCTACTGCAAAAGC
AATCGAAAAAGACTTGCTACGAACAATCCCGAATAACGCATGCTTTTCAAACATGGACAG
TATGGGAGTGCCNCGTTTGCGAAGGATTTTGAAAGGNCTAGCTTGGTTGTATCCTGACAT
TGGTTACTGCCAAGGTACNGGCGTTATAGTCGCGCACCTTTTGTTATTTATGGAGGAGGA
AGATACCTTTTGGATGATGTCTTCTATTATCGAAGATTTAGTCCCCGTGTCTTATTTCAG
CACTAATTTGCTCGGAGCTCACGCCGACCAGAGAGTTTTGTCNCAACTTTTAGCTCAATT
TTTGCCGAACGTCNACGATCTTTTGCAGCGTCATGATATCGAATTGGCGTTNATCACTTT
GTCTTGGTTTGTGACGCTAATGGCTGGAGTCATCCATCCGAAATTACTGNTGCGTGTTTG
GGATTGCTTTTTCATGGACGGCTCCGTTGTGTTGTTTAAAGTCGCGATCGGAATGTTGAA
AATGAGAGAGAAATCTTTGATTGANGTTGATAATCCCGCTGATATCTTCAACAACTTGTC
GGATATTTCGAATNGNCTCGACGANGCTGAAATTCTGTTGCAGAATGCAGATGANTGTGC
CGGTTCTTTGACTGATGTGATTTTGNACGCTAACAGAAAAAAACATGTCGCCTTTTTGAT
GNCAGAAAACGGAATTACCAACANGCAAGANGTGGTCCCGCGGAAACAAGGTTTGAAAAG
GCGGAATTATTTNGGAAAATTTCTCTTTGGTACAACNGTCGATAATCAGTTCGAATACGC
CAAGGCNAAAAACATCAAACAAACCGAATTAGTGTCGGATCTTCGCAACGCGATTCTCTC
NATCATGAAACATTTTCAAANCTGTGACANGCANGACNTCGTCTTCAAGCCGGACTATTC
NATCGAGAGTCATCAGCTNGACCGCGAAAACTTCATGAACGTGTCTTTGAAAAGGCGCCA
ACGTGCNAAAGCTCTTCTCAAATTCGATCGTCACGATGATGATGAATTAGGATTTCAGAA
ACANGACATCATCACTATTGTTAATATGAGNGANGAGCATTGTTGGATTGGTGAATTGAA
CGGNAGGCGNGGATGGTTCCCTGCAAAATATGTGCAACTTATTGATGAAAGAAGTAAAGT
GTATTCTGATGCNGGAGACGATGCCGTTAATAACACTATCACTGATTTGGTACGNGGTGG
ACTGTGCCCTGCTATATCTGTGATTTTCGAGCACGGNCTCAAACACTCGGTCATGCTAGG
TTCCGCATGCCANCCGTGGCTTTTTATCGAAGAGGCCGCCAATTACGAAGTCGAAAAAGA
CTTTAATTCAGTCTTTTCCAGACTCGTTTTGTGCAAGACTTTTCGTCTTGACGAAGACGG
TAAAGTGTTAACTCCGGAAGAGCTGCTTTACAGATGCGTGCAAGCCGTTAATCACACGCA
CAACTCGGCACATGCGCAAATGGACGTTAAATTCAGGTCTCTCGTATGCCTTGGGCTGAA
CGAGCAAGTGTTGCACTTGTGGCTCGAAATACTCTGCTCGTGCNCTCAGATCGTTACAAA
GTGGTATCACCCGTGGTCGTTTATNATGTCACCCGGATGGGTGCAGCTGAAATGCGAGCT
GCGCATTCTGTCGCAGTACACGTTCTACCTGTCGCAGGATTGGGAGTTGCAGAAGAAAAA
GGAATCGAAGGAATCGCTGAAAACAGGCGTCAGGGACATGCTGGTCAAACACCATTTGTT
TAGCTGGGATTTGTA
| SUPERFAMILY |
Rab-GTPase_TBC_sf (IPR035969) - T[76-244] 3.66E-43 - T[224-331] 2.54E-18 |
| SMART |
Rab-GTPase-TBC_dom (IPR000195) - T[93-310] 5.8E-58 |
| ProSiteProfiles |
Rab-GTPase-TBC_dom (IPR000195) - T[96-287] 32.922 |
| Pfam |
Rab-GTPase-TBC_dom (IPR000195) - T[100-306] 2.5E-46 |
| ProSiteProfiles |
SH3_domain (IPR001452) - T[457-516] 11.943 |
| SMART |
SH3_domain (IPR001452) - T[460-515] 2.2E-12 |
| SUPERFAMILY |
SH3-like_dom_sf (IPR036028) - T[460-516] 7.09E-15 |
| Pfam |
SH3_domain (IPR001452) - T[463-508] 2.5E-7 |
| ProSiteProfiles |
Run_dom (IPR004012) - T[532-695] 25.596 |
| SUPERFAMILY |
Run_dom_sf (IPR037213) - T[540-572] 8.37E-10 - T[609-691] 8.37E-10 |
| Pfam |
Run_dom (IPR004012) - T[541-693] 4.1E-31 |
| SMART |
Run_dom (IPR004012) - T[631-693] 4.4E-17 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SGSM3_HUMAN | 58.55 % | 882 | 0 |
| TBD2B_HUMAN | 30.892 % | 171 | 1.85E-44 |
| TBD2A_HUMAN | 30.341 % | 166 | 8.3E-43 |