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  1. Clone 'cien123264'
  2. Transcript 'KH2012:KH.C6.158.v2....'
  3. Transcript 'Cisavi.CG.ENS81.R2.1...'
  4. Transcript 'Boschl.CG.Botznik201...'

Transcript Model

Transcript Id

Boschl.CG.Botznik2013.chr9.g47316.01.t

Possible name(s)

MGAM; SI

Location

chr9 [3,154,093 / 3,165,685]

Sequences

Amino acid sequence

Length: 658

>Boschl.CG.Botznik2013.chr9.g47316.01.p
MKRLIVYLALAVCSRCISAYSAAQCPVQISESERIDCHPEPGASEAACNSRGCYWCETSD
FNNPQGYPWCFYESTPSSGCVDCFCNNKVDCYPEPGSNAVSCMDRGCLWCESQIPGEPWC
FYGEDDSETWTTPGNGVTQTTKTTTAAAGGDGCSTCSCSKKVDCFPEPGSSEAGCAARGC
LWCPSNTGDPWCIHSDGTTNPPDVGCQTTIEESARIDCWPGGGASELGCEEAGCIWCESN
TNGVPWCFFNTTDLPPGIPDNERVNCIPEGGFSPAECESRGCLFASVESASAPMCYFPDS
YGYKMVGQPTETATGYMISLVRVSAGSLFGNDAENLILTVDFDTDYRVHWKFIDADNVDR
FEVPFPINDAGNGGMASNPLYDIVFDNEPTFSFQIIRKSSGAILWDTSLGGLTFSDQFLQ
ISTYVPPDLTVYGFGETEHSKLKHSFDWSAWGMYARDQPPAGVGNLYGVHPFYIGIEQDA
NSHGVLFYNAAAQDITFSPAPGLIYRTIGGVLDFYMFLGPEPNTVIEQYNQAIGLPFLPP
YWSLGFQLCRYGYNSLDKVKXTVARMDAYGIPLDVQYGDIDYMDEQRDFTISQXNYNGLP
NYVXXLQAGGKHYVIILDPCLTADDPPGAYPPYERGVAADAYVKNSDGTDALGKVGCL

Nucleotide sequence

Length: 1,977

>Boschl.CG.Botznik2013.chr9.g47316.01.t
AATGAAACGACTTATCGTATATCTGGCATTAGCTGTGTGCTCGAGGTGTATTTCCGCATA
CTCTGCAGCACAATGTCCAGTCCAAATTTCGGAAAGTGAGCGAATTGACTGCCATCCGGA
ACCGGGAGCTTCAGAAGCCGCTTGCAATAGTAGGGGATGCTACTGGTGCGAAACGAGTGA
CTTCAATAACCCACAGGGATACCCTTGGTGTTTTTACGAGTCAACGCCATCATCAGGATG
CGTGGACTGCTTTTGCAACAATAAAGTCGACTGCTACCCAGAACCTGGTTCAAATGCTGT
GAGTTGCATGGATAGAGGTTGTTTGTGGTGTGAGAGCCAGATTCCAGGCGAGCCTTGGTG
CTTTTATGGTGAAGACGACTCTGAGACCTGGACTACGCCCGGAAACGGAGTAACACAAAC
CACGAAGACGACGACTGCTGCTGCTGGAGGTGATGGATGCTCCACTTGCTCTTGTTCGAA
GAAGGTAGATTGCTTTCCGGAACCAGGTTCTTCAGAAGCTGGATGTGCAGCGAGGGGCTG
TCTCTGGTGCCCCTCGAATACTGGTGATCCTTGGTGTATCCATGCCGATGGTACAACAAA
CCCGCCCGATGTTGGATGTCAAACAACCATCGAGGAATCTGCACGCATTGACTGCTGGCC
CGGTGGAGGCGCTAGTGAGCTTGGTTGCGAGGAAGCAGGCTGTATATGGTGCGAGAGTAA
CACTAACGGAGTTCCGTGGTGCTTTTTTAATACCACCGACTTGCCACCTGGCATTCCCGA
CAACGAAAGAGTCAACTGCATACCAGAAGGCGGTTTCAGTCCCGCCGAATGTGAGAGTAG
AGGATGTCTTTTCGCATCAGTGGAGTCGGCGAGTGCCCCGATGTGCTACTTCCCGGATAG
TTACGGATACAAAATGGTCGGCCAACCAACTGAAACTGCCACTGGCTATATGATATCCCT
GGTACGAGTTTCAGCCGGAAGTTTGTTTGGAAACGATGCGGAAAATTTAATCCTGACAGT
TGACTTCGATACAGACTACAGGGTTCATTGGAAGTTCATCGACGCGGACAACGTGGATCG
CTTTGAAGTTCCATTTCCTATTAACGACGCAGGCAACGGGGGCATGGCCAGCAATCCTCT
GTATGACATCGTTTTCGACAACGAACCCACGTTTTCTTTTCAGATTATCCGAAAATCGTC
TGGAGCCATATTATGGGACACCTCACTCGGTGGACTGACGTTTAGCGACCAATTTCTCCA
GATTTCCACTTACGTTCCACCAGATCTTACCGTCTATGGATTCGGTGAAACTGAACATAG
TAAACTGAAGCACAGTTTCGATTGGAGTGCATGGGGAATGTATGCTCGTGATCAACCGCC
AGCTGGAGTCGGCAATTTGTATGGCGTTCATCCGTTCTACATTGGTATCGAGCAAGACGC
CAATTCTCATGGAGTGTTGTTTTACAATGCTGCTGCGCAAGATATAACATTTAGTCCAGC
TCCTGGACTCATCTATAGAACGATCGGAGGCGTTCTCGACTTCTACATGTTTCTGGGTCC
GGAGCCCAACACCGTCATCGAACAGTACAACCAGGCAATCGGTTTGCCATTCTTACCGCC
GTATTGGTCGCTCGGATTCCAATTATGCCGATACGGATACAATAGTTTAGACAAGGTAAA
AGANACAGTAGCCCGAATGGATGCGTACGGAATACCACTGGATGTGCAATACGGAGATAT
CGATTATATGGACGAACAAAGGGACTTTACCATCAGCCAGACNAATTATAATGGGCTTCC
GAATTATGTGAANGANCTCCAAGCGGGAGGGAAACACTACGTTATTATTCTGGATCCGTG
TCTGACGGCCGACGACCCGCCTGGTGCCTATCCTCCTTATGAAAGGGGAGTAGCCGCAGA
TGCATACGTGAAGAACAGTGACGGTACTGATGCTTTGGGAAAAGTAGGTTGTTTATA

InterProScan

SMART
P_trefoil_dom (IPR000519) - T[23-77] 0.0013 - T[83-127] 1.8E-4 - T[156-199] 4.0E-4 - T[206-254] 1.4E-4 - T[257-302] 1.1E-7
ProSiteProfiles
P_trefoil_dom (IPR000519) - T[23-74] 15.193 - T[78-124] 12.031 - T[151-196] 12.45 - T[204-251] 13.48 - T[250-299] 12.198
CDD
P_trefoil_dom (IPR000519) - T[23-72] 1.63348E-5 - T[86-123] 9.41918E-6 - T[159-192] 6.81008E-6 - T[210-251] 1.74987E-5 - T[257-299] 2.07436E-6
Pfam
P_trefoil_dom (IPR000519) - T[29-72] 6.3E-10 - T[86-123] 5.4E-6 - T[153-192] 1.9E-5 - T[209-250] 3.1E-9 - T[258-298] 1.2E-10
SUPERFAMILY
Gal_mutarotase_sf_dom (IPR011013) - T[292-522] 1.69E-34
Pfam
Gal_mutarotase_N (IPR031727) - T[318-426] 8.0E-26
Pfam
Glyco_hydro_31 (IPR000322) - T[515-649] 8.7E-36
SUPERFAMILY
Glycoside_hydrolase_SF (IPR017853) - T[525-654] 3.26E-15

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
MGA_HUMAN 42.298 % 323 6.26E-96
SUIS_HUMAN 41.688 % 316 2.62E-93
MGAL_HUMAN 40.05 % 310 4.5E-91





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