- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chr9.g52311.01.t
Possible name(s)
CSDE1
Gene model
Location
chr9 [12,488,569 / 12,501,634]
Amino acid sequence
Length: 698
>Boschl.CG.Botznik2013.chr9.g52311.01.p
MDDEIRYGISWLSYLTAHAVNIINIAICVSPHTESDHSAGRVAPAVWEAKLNRLGRRTQA
YQEPPKTLKLFKITAQPPVMWMNSNQPSNSVPSLGKWSNGQFQNNQSYRSFGTSAGSVAL
STQQKALVTEVKNKSDLKEKLAAASQSPGHRGLSRTTSSGVYTMGVSRPSALSSLNQHRA
LQRSSSFDPVRMTPNLPPALSLRPSGLSPSTSPSQLGMGNATNGCRSRETGLVEKLLASY
GFIKCADREGRLFFHYSQFHGEAGNLNLNDEVEFDVSMDTRTGKPVAVQVVKLKKGTVVF
ELYSKERILGEITNPVFQGLPGVSSPMNGTSVNGVKGDEKGEPGSIPKFGSLCYDRNGEI
FFLSYSVNDLANKAIQLQARDQVSFYLATEKRTQVTRPRQITLVERAPPQXFTGIVTALK
ESFGFIERGDVVKEIFFHYSEVNATVPDLHIGDHVEYSIQDRNGKEVAAGVRLLPLGSVQ
LEEFSDEVFTGTVEKPLPPKAPNKLQHPQISNAAGDAATVGKINGGAAVLPQQPSVTLAG
VIQYMTPQGKSRKIHFGEKDRAANCSYTLRQGDQVSFFTVTDKRNSHQRAAGVTLLLRES
LELSKEKREWVREVLCVLVGLILSDVAAEPCQVNEKMPALSSTFLSKVEIFVKKYFHIIN
SRKLCDNVVGRSPLPHRNLTDMLVTYFALKFTAFQTNC
Nucleotide sequence
Length: 2,097
>Boschl.CG.Botznik2013.chr9.g52311.01.t
GATGGATGACGAAATTCGGTATGGTATATCTTGGTTAAGTTATCTAACTGCGCGCGCTGT
AAATATCATCAACATCGCGATTTGTGTTTCTCCTCACACTGAATCAGACCACTCAGCTGG
TCGCGTCGCACCTGCTGTCTGGGAAGCAAAATTGAACCGATTGGGACGAAGAACACAAGC
CTATCAAGAACCACCGAAAACACTAAAACTCTTCAAGATAACCGCACAGCCTCCAGTCAT
GTGGATGAACTCGAACCAACCATCCAATTCCGTCCCATCTCTGGGAAAATGGTCCAACGG
TCAATTTCAAAACAATCAATCATACCGTTCCTTTGGGACCTCTGCTGGAAGTGTTGCCTT
GTCTACGCAGCAAAAAGCGCTCGTTACCGAAGTCAAAAATAAAAGTGATTTGAAAGAGAA
GTTGGCTGCAGCATCTCAGTCGCCTGGGCACCGAGGATTATCACGAACTACAAGCAGCGG
GGTATACACCATGGGAGTGTCCAGGCCGTCGGCCCTGTCCAGCCTAAATCAGCACCGTGC
TCTTCAGAGATCGTCCAGTTTTGACCCGGTTCGCATGACGCCGAATTTACCGCCGGCCCT
CAGCCTGCGTCCGAGTGGTCTGTCGCCGTCTACCAGCCCGTCCCAACTTGGCATGGGCAA
CGCGACGAACGGGTGCCGCAGTCGGGAGACAGGCCTCGTTGAGAAATTACTGGCGTCGTA
CGGATTTATAAAATGCGCGGATCGCGAGGGCCGGCTGTTTTTTCACTACAGTCAGTTTCA
CGGAGAAGCCGGCAACCTGAACTTAAACGATGAAGTGGAATTTGACGTGTCGATGGACAC
TAGAACGGGGAAGCCGGTGGCCGTTCAGGTCGTGAAACTGAAAAAAGGCACCGTCGTCTT
CGAATTGTACAGCAAGGAGCGTATTCTCGGGGAGATAACCAACCCGGTGTTTCAAGGCTT
GCCGGGGGTGTCGTCTCCTATGAACGGCACTTCCGTGAACGGAGTCAAAGGCGACGAAAA
GGGGGAGCCCGGTTCTATTCCGAAATTCGGAAGTCTTTGTTACGACCGTAACGGGGAAAT
ATTTTTTCTCTCATATTCGGTGAACGATCTCGCCAACAAGGCCATTCAGCTGCAAGCCAG
AGACCAAGTGTCCTTCTACCTCGCCACTGAAAAGCGGACTCAAGTAACGCGTCCCCGGCA
GATAACTCTGGTGGAGCGCGCCCCGCCGCAGNGATTTACAGGAATAGTCACGGCCTTGAA
AGAATCGTTTGGCTTTATTGAAAGAGGCGATGTTGTTAAAGAGATATTTTTCCACTATAG
CGAAGTCAACGCCACAGTTCCAGATTTGCATATAGGAGATCACGTCGAATACAGCATCCA
AGATAGAAAGGGCAAAGAAGTGGCGGCCGGCGTACGTCTGCTTCCGCTCGGATCCGTGCA
GCTGGAGGAATTTTCCGACGAGGTCTTCACCGGGACCGTGGAGAAGCCGCTTCCGCCTAA
GGCTCCGAACAAGCTGCAGCATCCTCAGATCAGTAACGCGGCAGGAGACGCCGCCACAGT
CGGCAAGATCAACGGCGGCGCGGCGGTCCTGCCCCAGCAGCCTTCCGTCACGCTGGCCGG
CGTGATCCAGTACATGACGCCGCAGGGCAAGTCGCGGAAGATCCACTTTGGCGAGAAGGA
CCGGGCCGCCAACTGCTCGTACACTCTGCGTCAGGGGGACCAGGTGTCGTTCTTTACGGT
GACCGACAAGAGAAACTCGCATCAGCGGGCGGCTGGCGTCACTTTGCTCTTGCGGGAGTC
TCTGGAGCTCAGCAAGGAGAAGAGGGAATGGGTGAGAGAGGTCTTGTGTGTCTTGGTGGG
TTTAATCCTGTCGGATGTGGCTGCAGAGCCATGCCAAGTGAACGAAAAAATGCCTGCGTT
ATCCAGCACATTTCTGTCTAAAGTTGAGATTTTCGTGAAAAAATATTTCCACATAATTAA
TTCTCGGAAACTTTGTGACAATGTTGTGGGTCGATCGCCGCTTCCTCACAGAAATCTCAC
TGACATGCTTGTTACCTATTTCGCATTGAAGTTTACAGCGTTTCAAACAAACTGTTG
| SUPERFAMILY |
NA-bd_OB-fold (IPR012340) - T[225-298] 1.93E-16 - T[408-475] 1.1E-13 |
| Pfam |
CSP_DNA-bd (IPR002059) - T[230-292] 8.8E-13 - T[413-472] 5.7E-14 |
| SMART |
CSD (IPR011129) - T[230-293] 1.9E-10 - T[413-474] 3.0E-13 |
| CDD |
CSP_DNA-bd (IPR002059) - T[240-292] 3.64184E-9 - T[413-473] 4.80178E-12 |
| ProSitePatterns |
Cold-shock_CS (IPR019844) - T[240-259] . - T[423-442] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CSDE1_HUMAN | 39.948 % | 256 | 9.04E-75 |