- Transcript 'Haaura.CG.MTP2014.S1...' >
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- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chr9.g53297.01.t
Possible name(s)
DHH; IHH; SHH
Gene model
Location
chr9 [13,530,824 / 13,550,818]
Amino acid sequence
Length: 647
>Boschl.CG.Botznik2013.chr9.g53297.01.p
GYEPVPCNSIALRLMYLNEEMNCQDTALILAVLLLATSQRMAESCRGPGPRFSTRHPXKT
QVALVYXQHIPXMSEKTIGASGPAEGKIRRSDTKFKDLVVTLDQNVVFRNEEGTGADRMM
TKRCQDRLKTLALMVVNRWPKVKLRVIEAWDEDGNHXXDSLHYEGRAVDLTTDDRXEEKY
GMLARMAVNAGFDWVFYESKHHIHASVIADDEVSMGSGCFPKDSTVTTHDGEVLKMDELK
VGDKVLTYDRDTGARKLSDVILMMHENADTVANFVKITARTENGHQSIQRQVTLTKNHLI
YKRESTLPDRWHPRAVFAEDIQLGDYVYLNSYEITNSTDFAAAKVTAVHSVEGKGVFAPL
TAEGSIIVDGVAASSYAVYHNEYISHALFYPLRLLWRKTVRTKHKDQTTDTKLQPKPSKY
REESSTATVLNLFPLRQIEDIMVQALKLPSLCISSIVVTNPNIFNDFFTSESKEHKYWTH
IISYNRHDRSSLNQICRTGIVEQYLAGCPTLIEHIQLSTLKSKYKQFLLNQYQSALKFTG
PRPDISISPSVTCRLPSFSPHSACNVHASYLHRPDPKKCLISKTTPSRFDTFPYFHCIAV
LWCFQLNGIAMITTFYDIVSVQKHEIFCMTRRGTGIIFVVAAKEIHI
Nucleotide sequence
Length: 1,945
>Boschl.CG.Botznik2013.chr9.g53297.01.t
GGTTACGAGCCTGTACCGTGTAATTCTATCGCGTTGCGACTGATGTACCTCAATGAAGAG
ATGAATTGCCAAGACACAGCATTGATCCTCGCCGTGTTGCTGCTCGCAACGAGCCAGAGG
ATGGCGGAAAGCTGCCGGGGCCCGGGGCCGCGGTTTTCGACGAGACACCCTCANAAGACG
CAAGTGGCGCTGGTATACCGNCAGCATATTCCAAANATGTCGGAAAAGACTATCGGGGCT
AGCGGGCCGGCGGAGGGGAAGATTCGAAGGAGTGATACGAAATTTAAAGATCTTGTCGTG
ACCTTGGACCAGAATGTCGTGTTTCGGAACGAGGAAGGCACGGGCGCCGACAGAATGATG
ACAAAGGGATGCCAGGATCGTCTAAAAACCTTGGCGCTGATGGTGGTGAATAGATGGCCA
AAAGTGAAGCTACGTGTAATCGAGGCTTGGGACGAAGACGGGAATCACGGNCGNGACTCG
CTGCATTACGAAGGTAGAGCAGTGGACCTCACCACGGACGACAGAGANGAGGAGAAGTAC
GGAATGCTGGCTCGGATGGCCGTGAATGCCGGGTTTGACTGGGTATTTTACGAATCAAAG
CATCACATACACGCAAGTGTCATTGCCGGTGACGAAGTCTCCATGGGATCTGGATGCTTT
CCTAAAGATAGCACAGTGACCACGCATGACGGCGAAGTACTCAAGATGGACGAATTGAAA
GTCGGAGACAAAGTTCTGACGTACGATCGCGACACTGGCGCCCGAAAACTATCCGACGTG
ATTCTCATGATGCACGAGAACGCTGACACTGTCGCAAATTTCGTCAAAATCACAGCCAGA
ACTGAGAACGGGCACCAAAGCATTCAGCGGCAAGTCACACTGACTAAGAATCATCTTATT
TACAAACGCGAATCAACACTGCCCGACAGGTGGCATCCGCGAGCTGTATTTGCCGAGGAT
ATACAGCTAGGAGATTACGTATATTTGAACTCGTACGAAATAACGAATTCAACTGACTTT
GCCGCTGCAAAAGTAACAGCGGTCCACTCCGTTGAAGGTAAGGGCGTTTTCGCCCCACTT
ACCGCAGAAGGAAGCATTATAGTAGACGGCGTGGCTGCTTCATCATACGCGGTATATCAC
AATGAATACATATCCCACGCATTATTTTATCCGTTACGCCTATTGTGGAGGAAAACCGTC
CGTACGAAACACAAGGACCAGACGACAGATACGAAACTTCAGCCGAAACCTTCCAAATAT
CGAGAGGAAAGCAGTACAGCGACTGTTTTGAATCTGTTTCCACTCCGTCAAATAGAAGAC
ATTATGGTGCAAGCACTGGAATTGCCAAGTTTATGTATCAGCTCCATTGTGGTCACTAAC
CCGAACATTTTCAATGACTTCTTTACCTCGGAATCAAAAGAGCATAAGTACTGGACCCAT
ATCATATCATATAATCGACATGATAGATCATCGCTCAATCAAATATGCCGGACCGGCATT
GTGGAACAGTATCTCGCCGGCTGCCCGACACTCATCGAGCATATCCAGTTATCCACATTG
AAGTCGAAATACAAGCAATTTCTACTGAATCAATACCAGTCAGCCCTCAAGTTTACCGGA
CCACGACCTGACATATCGATCTCGCCTTCCGTCACATGTCGTTTGCCTTCTTTTAGTCCT
CATTCAGCGTGCAATGTGCATGCATCCTATTTACATCGCCCAGACCCGAAAAAGTGTCTG
ATTTCAAAGACTACTCCAAGTCGTTTCGATACCTTCCCATATTTTCATTGTATCGCGGTC
TTGTGGTGTTTTCAATTGAACGGCATCGCAATGATCACTACGTTCTACGATATAGTTTCG
GTTCAGAAACACGAAATATTTTGCATGACACGACGTGGAACTGGCATCATTTTCGTTGTA
GCCGCAAAGGAGATACATATTTGAA
| Gene3D |
Hedgehog_sig/DD-Pept_Zn-bd_sf (IPR009045) - T[43-210] 4.3E-68 |
| Pfam |
Hedgehog_signalling_dom (IPR000320) - T[47-206] 3.1E-72 |
| SUPERFAMILY |
Hedgehog_sig/DD-Pept_Zn-bd_sf (IPR009045) - T[62-214] 4.19E-64 |
| PRINTS |
Hedgehog (IPR001657) - T[119-137] 2.8E-51 - T[139-156] 2.8E-51 - T[159-181] 2.8E-51 - T[183-204] 2.8E-51 - T[294-304] 2.8E-51 - T[355-369] 2.8E-51 - T[371-394] 2.8E-51 |
| Pfam |
Hint_dom (IPR001767) - T[216-398] 4.1E-46 |
| SMART |
Hint_dom_N (IPR003587) - T[217-331] 5.0E-20 |
| SUPERFAMILY |
Hint_dom_sf (IPR036844) - T[219-377] 1.31E-31 |
| ProSiteProfiles |
Intein_N (IPR006141) - T[219-302] 8.941 |
| SMART |
Hint_dom_C (IPR003586) - T[337-381] 6.6E-5 |