- Transcript 'KH2012:KH.C6.158.v1....' >
- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chr9.g56604.01.t
Possible name(s)
COCH; CRISPLD2; VIT
Gene model
Location
chr9 [6,322,635 / 6,337,612]
Amino acid sequence
Length: 794
>Boschl.CG.Botznik2013.chr9.g56604.01.p
MNAFCVLFVVAYATSMTLSIPLAGSEYYYRVLAVGDKEELGPYKEHHRDLSFLRSDFNPY
FIQEVKTSISVSCHTEARHIDGTVIQVTCPSGCDKITSKIIGTATYTADSFICGAAIHDG
VIEADVGGAVTLRKTEGKTSYKGSTRNGVSSESHGSSSRSIIFQNAGQVRLPTYEVSCTV
QGDWIRETDFNVICPAGCGVVADKLWGDETYADSSYLCAAAIHSGVIEDSIGGEVHVMKT
GYQELFQRRIRNEMISLRSNIAQESFEMEKIDVKASMALEVSCYFQADHVVEDVFTVRCP
PGCDEVSDQVRGTGIYTRDSFVCASAIHAGRISAPLGGLITVYKIKGQVAFVGSLQHEVK
SLGQENGDNSFIFQDTTVREPDISTVACAIRGDHLRDDVATVACPGNCDYEDYEVWGTET
YKSDSHICIAAAHAGIIDVSLGGPVTVKRVPGLMSYDNSTHQRIIAKPFGKWDKSFIFSD
NIQKTGSVLAVNCDFTADLMNDTMFSIRCPQTCSTVSQKVWGDGIYTSDSPLCTAATHDG
YIKDSIGGVVTVHNVEGKAVYQKAFRYNIQSFSYGSWSRSSVIFQRPSIEVESVYPVTCE
TRANFMVDDTFTVICPAGCDAIENNVWGTGVYTDDSYICAAAIHDGRIEVDVGGQVTLGK
VPGLDIYTGTXRNYIMSANRGKWRKSIIFRDIVQQRASTYTLSCTVEGGMILESQYTVIC
PPGCRKEAERVWGDVIYTKDSFICASAIHAGKITDENGGQLDVVGTMSSNFKRSTKNGVS
SKAYRKHTDAFQFL
Nucleotide sequence
Length: 2,385
>Boschl.CG.Botznik2013.chr9.g56604.01.t
AATGAACGCGTTCTGTGTGCTGTTTGTTGTTGCATATGCAACTTCCATGACACTTTCAAT
ACCGCTGGCAGGGAGTGAATACTATTACAGAGTGCTTGCTGTAGGAGATAAAGAGGAATT
GGGACCATACAAAGAACACCACAGAGATTTGAGCTTTTTGCGATCTGATTTCAACCCAGA
TTTTATTCAAGAGGTGAAAACAAGCATATCAGTTTCGTGTCACACAGAGGCTAGACACAT
AGATGGAACCGTCATTCAAGTTACGTGCCCATCCGGGTGCGATAAAATTACCAGCAAAAT
AATAGGGACAGCGACATACACAGCGGATTCCTTCATATGCGGCGCAGCTATTCACGATGG
CGTGATAGAAGCTGATGTCGGCGGTGCCGTGACGCTGAGAAAAACAGAGGGCAAAACTTC
CTACAAAGGATCCACCCGAAATGGAGTGTCCTCAGAGAGTCACGGCAGCTCGTCGCGGTC
GATTATATTCCAAGATGCCGGTCAGGTCAGACTGCCAACATATGAAGTGTCGTGTACCGT
ACAGGGCGACTGGATAAGAGAAACGGACTTCAATGTAATTTGCCCTGCCGGATGTGGGGT
AGTGGCTGATAAATTGTGGGGAGATGAGACCTATGCGGATTCGTCATACTTGTGCGCGGC
AGCGATCCACAGCGGTGTGATTGAAGACTCGATCGGTGGAGAAGTCCATGTCATGAAGAC
TGGTTATCAGGAGCTGTTCCAGAGGCGAATCAGAAATGAAATGATTAGCCTCCGCTCCAA
TATCGCACAAGAATCCTTCGAAATGGAGGAGATCGACGTGAAAGCATCGATGGCCTTAGA
AGTGTCGTGTTACTTCCAAGCTGACCACGTAGTGGAAGACGTGTTCACTGTTCGGTGCCC
GCCGGGATGCGATGAAGTATCCGACCAAGTACGAGGAACTGGGATATATACTCGCGACTC
GTTTGTGTGCGCCAGTGCAATCCATGCCGGAAGAATTAGCGCTCCACTAGGTGGACTTAT
CACTGTGTACAAAATAAAGGGGCAAGTTGCGTTTGTTGGATCACTACAACATGAAGTGAA
GTCACTTGGACAGGAAAACGGGGACAACTCCTTCATATTTCAAGATACCACAGTGCGCGA
ACCGGATATATCTACAGTGGCGTGCGCTATACGCGGTGATCACCTGCGCGATGACGTGGC
AACGGTGGCTTGTCCTGGAAATTGCGACTACGAAGATTACGAAGTTTGGGGCACTGAAAC
ATACAAGTCAGACTCCCACATCTGTATTGCCGCCGCGCACGCTGGCATCATAGACGTGTC
TCTTGGCGGCCCCGTGACGGTAAAGCGAGTTCCTGGTTTGATGTCATACGACAACTCCAC
ACACCAGAGAATCATAGCCAAGCCTTTTGGAAAGTGGGACAAGTCTTTCATATTTTCAGA
CAACATTCAGAAAACTGGGTCCGTCCTCGCGGTAAATTGCGACTTCACCGCTGATCTCAT
GAACGACACCATGTTCTCGATTCGCTGTCCACAAACTTGTAGCACAGTGTCGCAGAAGGT
CTGGGGTGACGGAATATACACGAGTGACTCTCCGCTATGTACCGCAGCGACACACGATGG
ATACATCAAGGATTCTATTGGAGGTGTCGTGACTGTTCATAACGTGGAAGGAAAAGCAGT
TTACCAGAAGGCATTTCGGTACAACATTCAATCGTTCAGTTATGGCTCATGGTCAAGATC
GTCCGTTATATTCCAAGGGCCATCTATCGAAGTGGAGTCGGTGTACCCTGTTACCTGCGA
AACCAGAGCAAACTTTATGGTTGACGATACGTTTACGGTGATTTGCCCAGCCGGATGCGA
CGCTATTGAAAATAACGTCTGGGGTACCGGAGTATATACCGATGACTCGTACATTTGCGC
TGCCGCTATACACGACGGGAGAATAGAAGTCGATGTGGGCGGTCAAGTAACTCTTGGGAA
GGTTCCCGGTTTGGATATTTACACAGGAACCANCAGAAACTATATAATGAGTGCGAACCG
CGGGAAGTGGAGAAAGTCAATCATATTTAGAGATATTGTGCAGCAACGCGCTTCAACATA
CACTTTGTCATGTACCGTCGAAGGCGGGATGATACTAGAAAGTCAATATACCGTTATATG
CCCGCCGGGATGTCGAAAGGAAGCTGAGAGAGTATGGGGAGACGTGATCTATACAAAAGA
TTCCTTCATATGCGCATCTGCGATTCATGCCGGAAAGATTACCGATGAAAATGGCGGACA
ATTGGATGTCGTTGGAACCATGTCAAGCAACTTTAAAAGGTCAACGAAAAATGGGGTCTC
CAGTAAAGCCTATCGAAAGCACACCGACGCTTTCCAATTCCTATA
| Gene3D |
LCCL_sf (IPR036609) - T[66-165] 1.7E-26 - T[172-270] 2.0E-20 - T[276-375] 1.4E-23 - T[383-481] 2.2E-24 - T[486-585] 3.6E-23 - T[593-690] 1.0E-27 - T[697-794] 4.7E-24 |
| ProSiteProfiles |
LCCL (IPR004043) - T[67-161] 22.06 - T[172-266] 21.468 - T[277-371] 17.801 - T[382-476] 22.004 - T[487-581] 17.519 - T[593-687] 21.933 - T[698-791] 17.166 |
| SUPERFAMILY |
LCCL_sf (IPR036609) - T[69-163] 3.53E-25 - T[173-268] 6.41E-21 - T[279-373] 1.44E-23 - T[385-479] 2.22E-23 - T[489-583] 8.5E-24 - T[596-690] 1.31E-25 - T[700-793] 2.88E-21 |
| SMART |
LCCL (IPR004043) - T[69-152] 1.4E-15 - T[174-257] 1.0E-11 - T[279-362] 6.3E-12 - T[384-467] 3.6E-12 - T[489-572] 4.3E-12 - T[595-678] 3.8E-14 - T[700-782] 4.6E-9 |
| Pfam |
LCCL (IPR004043) - T[74-160] 2.3E-22 - T[187-265] 3.5E-15 - T[289-370] 1.6E-17 - T[398-476] 2.8E-16 - T[500-580] 5.5E-19 - T[602-686] 1.8E-18 - T[713-789] 1.1E-17 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CRLD2_HUMAN | 32.821 % | 81.6 | 4.88E-16 |