- Transcript 'KH2012:KH.C12.417.v1...' >
- Clone 'citb035f22' >
- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chr9.g56968.01.t
Possible name(s)
DLL1; NOTCH1; NOTCH2
Gene model
Location
chr9 [6,912,620 / 6,914,084]
Amino acid sequence
Length: 361
>Boschl.CG.Botznik2013.chr9.g56968.01.p
MNGATCINNGNGEFVCVCKRGFEGMRCERYNPYSDSEDDYDVPEVISSTTLKTPEPDKEC
ENGGLCKIYAMGGGCKKCICNPGYTGDHCENNVNDCLTLPCANGGQCFDLHNDFHCECQR
GYTGRYCENDIDECVLVPGICHNGGTCNNTYGSFDCTCAAGFTGVLCHDPVPVANDVKVP
LITRIVAEAEKISTVYETTTSPDIVQPPLKPVAIPRQPVKVTKITHEVKISSGGAEVLIS
SGGSGGNNESSTVHILMLLFLGIAVLISGAICALVYVRCTRGHQQDKSKDPESQIPPSKS
SGRQEITTVLESTSDSIEDLREAAQPCLPRTXFETKGRAHVPVSPAAVRAQRDDTATAFR
D
Nucleotide sequence
Length: 1,083
>Boschl.CG.Botznik2013.chr9.g56968.01.t
CATGAACGGCGCGACTTGCATCAACAACGGAAACGGCGAGTTCGTTTGCGTTTGCAAACG
TGGATTCGAAGGGATGAGATGCGAGCGGTATAATCCGTACAGCGACTCGGAAGACGATTA
TGACGTACCGGAAGTGATCAGCAGCACCACGTTGAAAACGCCGGAACCGGATAAGGAATG
CGAGAACGGCGGACTCTGCAAGATATACGCCATGGGAGGCGGGTGTAAAAGATGCATCTG
CAATCCCGGATACACCGGCGACCATTGCGAGAACAACGTCAACGATTGCCTCACTTTGCC
TTGCGCGAACGGCGGCCAGTGCTTCGACCTGCACAACGATTTCCACTGCGAGTGCCAACG
CGGCTACACCGGTCGCTACTGCGAAAACGACATCGACGAATGCGTGCTGGTGCCGGGAAT
ATGCCACAACGGAGGCACCTGCAACAACACGTACGGGTCTTTCGACTGTACGTGCGCCGC
CGGGTTTACCGGAGTGCTGTGCCACGATCCGGTTCCGGTCGCGAACGATGTCAAAGTGCC
TTTGATCACTCGGATAGTAGCGGAAGCGGAGAAAATATCTACGGTGTACGAAACTACTAC
ATCCCCTGATATAGTACAGCCTCCATTAAAACCGGTTGCGATCCCGAGACAGCCGGTTAA
AGTCACGAAGATCACGCACGAAGTGAAAATCAGTTCCGGAGGCGCCGAAGTCTTAATCAG
CTCCGGCGGTAGCGGTGGTAATAACGAAAGCTCGACCGTTCACATCTTGATGCTTCTCTT
TCTTGGGATCGCAGTATTGATATCGGGCGCGATTTGCGCTTTGGTGTACGTGCGATGCAC
GCGCGGACATCAGCAGGATAAATCAAAAGACCCAGAAAGCCAAATTCCTCCTAGCAAATC
CAGCGGACGCCAAGAAATCACGACAGTGTTGGAATCTACCTCAGACTCAATCGAAGACTT
GCGGGAGGCCGCACAGCCTTGCTTGCCTAGGACCTGNTTCGAAACGAAAGGGCGCGCCCA
CGTGCCCGTCTCCCCCGCCGCCGTACGCGCACAGCGCGACGATACGGCAACCGCGTTTCG
TGA
| ProSiteProfiles |
EGF-like_dom (IPR000742) - T[1-28] 15.16 - T[52-90] 9.253 - T[92-128] 22.19 - T[130-168] 20.753 |
| SMART |
EGF-like_dom (IPR000742) - T[1-28] 4.9 - T[59-90] 35.0 - T[95-128] 8.4E-6 - T[133-168] 1.8E-5 |
| SMART |
EGF-like_Ca-bd_dom (IPR001881) - T[1-28] 0.059 - T[92-128] 1.1E-9 - T[130-168] 4.0E-11 |
| Pfam |
EGF-like_CS (IPR013032) - T[2-22] 2.7E-4 |
| ProSitePatterns |
EGF-like_CS (IPR013032) - T[16-27] . - T[16-27] . - T[78-89] . - T[78-89] . - T[116-127] . - T[116-127] . - T[156-167] . - T[156-167] . |
| Pfam |
EGF-like_dom (IPR000742) - T[96-126] 1.9E-6 |
| ProSitePatterns |
EGF-type_Asp/Asn_hydroxyl_site (IPR000152) - T[107-118] . - T[147-158] . |
| ProSitePatterns |
EGF_Ca-bd_CS (IPR018097) - T[130-156] . |
| Pfam |
EGF-like_Ca-bd_dom (IPR001881) - T[130-163] 2.0E-10 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| NOTC2_HUMAN | 38.922 % | 110 | 3.11E-26 |
| NOTC1_HUMAN | 40.588 % | 113 | 2.27E-27 |
| DLL1_HUMAN | 35.417 % | 108 | 7.76E-26 |