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- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chr9.g58157.01.t
Possible name(s)
PABPC1; PABPC3; PABPC4
Gene model
Location
chr9 [2,073,381 / 2,075,277]
Amino acid sequence
Length: 631
>Boschl.CG.Botznik2013.chr9.g58157.01.p
MASLYVGDLHYDATEAMLYEKFSQAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL
DTMNFDPIKGRPIRIMWSQRDPGLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK
VSCDMNGSKGYGFVHFETEEAAQRAIEKVDGMLLNDKKVYVGKFISRSERHKQIGERMKN
FTNVYIKNFGENLDTEKLREMFEAYGPLKSCVVMADQEGKSRGFGFAAFENHEDAQKAVS
ELNGKDIGGECIYVGRAQKKSERMAEIRQRYERQKQEQIQRYQGVNLYVKNLDDTIRDDS
LREAFQAYGTITSAKVMTDGERSKGFGFVCFSAPDEATKAVTEMNGRIVGTKPLYVALAQ
RKEDRKAHLATQYMHRMSNISGVRVAHPNQLMGQSFQSGAPYYMPALAGTGNRYVPGQII
RTASRWQAAAPSGFPMQNIRQPHTGGPIRPVTAPARNGMQQQPHRLDMIPGRQQPMYMQP
NRQAFKYNQSVRNPASIASGVGQPQHAQQQAEAAQPAVHVQGQEPLTPSALAAAPPHEQK
QMLGERLYPIIESEHPSLASKITGMLLEIDNSELLHMLESRDSLKAKMEEAVAVLQAHQA
KVAAATRQAPAQAPAQVNGGAPNAVAVGGQE
Nucleotide sequence
Length: 1,896
>Boschl.CG.Botznik2013.chr9.g58157.01.t
GATGGCGTCCCTGTACGTCGGCGACTTGCATTACGACGCTACCGAAGCCATGTTGTACGA
GAAGTTCTCTCAAGCTGGCCCCGTTCTGTCGATCCGAGTGTGCCGCGACATGATCACCAG
AAGATCTCTCGGTTACGCGTACGTCAACTTTCAACAACCGGCGGATGCGGAACGCGCGTT
GGACACCATGAACTTCGACCCGATCAAAGGACGTCCGATCAGAATCATGTGGAGTCAACG
TGACCCCGGCCTCAGGAAGTCTGGTGTCGGAAATATTTTCATCAAAAATCTGGACAAGTC
CATCGACAACAAGGCGCTGTACGATACTTTCTCCGCGTTCGGTAATATCTTGTCGTGCAA
AGTGTCTTGCGACATGAACGGCTCGAAAGGGTACGGTTTCGTGCATTTCGAGACGGAGGA
AGCGGCACAGCGCGCTATTGAAAAAGTGGACGGCATGTTGCTCAACGATAAAAAGGTGTA
CGTCGGAAAGTTCATCTCCCGCTCCGAACGCCACAAGCAGATCGGGGAACGCATGAAGAA
TTTCACCAACGTGTACATCAAGAATTTCGGAGAGAATCTGGACACGGAGAAACTGCGCGA
GATGTTCGAGGCCTACGGCCCGCTCAAAAGCTGCGTGGTGATGGCAGATCAAGAAGGGAA
ATCTCGCGGGTTCGGTTTCGCCGCCTTTGAAAATCATGAAGACGCTCAAAAAGCCGTGTC
TGAACTAAACGGGAAAGACATCGGAGGAGAGTGTATCTACGTCGGACGCGCTCAGAAAAA
ATCCGAAAGAATGGCTGAAATCAGGCAGCGGTACGAGAGGCAAAAGCAGGAGCAGATTCA
GCGGTACCAAGGTGTGAATTTGTATGTCAAAAATCTGGATGACACCATCAGAGATGATTC
TTTGCGTGAAGCTTTCCAAGCTTACGGCACTATTACCAGCGCGAAAGTCATGACTGATGG
GGAACGATCGAAAGGATTCGGGTTTGTGTGTTTCAGCGCTCCCGATGAAGCGACGAAAGC
TGTCACTGAGATGAACGGACGCATCGTGGGTACCAAACCGTTGTACGTAGCTTTGGCGCA
GAGAAAGGAAGACCGTAAAGCGCATTTGGCGACGCAGTACATGCACCGAATGTCTAACAT
ATCGGGTGTGCGTGTGGCGCATCCTAACCAGCTGATGGGACAGTCGTTTCAATCCGGCGC
GCCGTATTATATGCCGGCGCTGGCCGGCACTGGTAACCGATATGTGCCCGGGCAGATTAT
CCGTACGGCTTCGAGATGGCAGGCTGCGGCACCTTCTGGATTCCCGATGCAGAATATCAG
ACAACCGCACACGGGCGGTCCGATTAGACCCGTGACCGCGCCGGCCAGGAATGGAATGCA
GCAACAACCGCACCGTCTTGACATGATCCCAGGACGTCAGCAGCCGATGTACATGCAGCC
TAACCGACAAGCATTCAAATACAACCAGAGTGTACGAAACCCGGCGTCGATCGCGTCCGG
AGTGGGACAACCACAGCACGCGCAACAACAGGCAGAGGCTGCTCAACCGGCTGTCCATGT
ACAAGGGCAAGAGCCTCTCACCCCGAGCGCGCTCGCAGCTGCCCCGCCGCACGAGCAAAA
GCAGATGTTGGGCGAGCGTTTGTACCCCATCATCGAGTCCGAACATCCGAGCTTGGCTTC
GAAGATCACCGGTATGCTGTTGGAGATCGACAACTCCGAACTGCTGCACATGCTCGAGTC
CCGCGACTCGCTCAAGGCGAAGATGGAGGAGGCCGTCGCCGTGTTGCAGGCTCACCAGGC
TAAGGTCGCGGCTGCCACTCGTCAAGCGCCCGCTCAAGCTCCCGCTCAAGTTAACGGAGG
TGCCCCGAATGCGGTAGCCGTCGGCGGGCAAGAATA
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[2-83] 3.8E-25 - T[84-170] 4.8E-24 - T[171-267] 3.6E-25 - T[268-372] 9.9E-27 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[2-80] 17.66 - T[90-166] 16.773 - T[182-259] 18.973 - T[285-361] 18.24 |
| TIGRFAM |
PABP_1234 (IPR006515) - T[2-596] 3.5E-230 |
| SMART |
RRM_dom (IPR000504) - T[3-76] 4.1E-22 - T[91-162] 8.5E-23 - T[183-255] 5.2E-25 - T[286-357] 2.4E-23 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[3-169] 4.89E-49 - T[181-365] 6.04E-48 |
| Pfam |
RRM_dom (IPR000504) - T[4-74] 3.5E-20 - T[92-159] 3.1E-19 - T[184-252] 3.3E-21 - T[287-354] 8.1E-18 |
| SMART |
RRM_dom_euk (IPR003954) - T[91-162] 0.87 - T[183-255] 3.6 - T[286-357] 3.4 |
| SUPERFAMILY |
PABP-dom (IPR036053) - T[468-606] 9.68E-43 |
| ProSiteProfiles |
PABP_HYD (IPR002004) - T[523-600] 21.356 |
| Pfam |
PABP_HYD (IPR002004) - T[529-595] 2.8E-28 |
| SMART |
PABP_HYD (IPR002004) - T[535-598] 1.1E-33 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PABP1_HUMAN | 65.105 % | 794 | 0 |
| PABP4_HUMAN | 61.742 % | 764 | 0 |
| PABP3_HUMAN | 60.731 % | 729 | 0 |