Aniseed - Transcript Card

Transcript Model

Transcript Id

Boschl.CG.Botznik2013.chrUn.g00313.01.t

Possible name(s)

DDX39B; DDX6; EIF4A3

Gene model

Boschl.CG.Botznik2013.chrUn.g00313

Location

chrUn [1,991,281 / 1,995,850]

Sequences

Amino acid sequence

Length: 247

>Boschl.CG.Botznik2013.chrUn.g00313.01.p
ADKLLSQDFKRMIAEIVSYLPQSRQILLFSATFPCSVKEFMERYMKKPYEINLMDELTLK
GVTQYYAFLEEKNKVHCLNTLFSKLQINQSIIFCNSTHRVELLAKKITELGYSCFYIHAR
MKQDYRNRVFHDFRQGLCRNLVCSDLFTRGIDIQAVNVVINFDFPKMSETYLHRIGRSGR
YGHLGLAINLITYADRFNLKAIEEELHTDIKPIPPNLPIQISTELQVEVSIYNTCQNDFK
WYQEMNV

Nucleotide sequence

Length: 744

>Boschl.CG.Botznik2013.chrUn.g00313.01.t
CCGACAAATTATTATCTCAAGACTTCAAAAGAATGATCGCGGAAATCGTTTCGTACCTGC
CACAGAGCCGACAGATTCTTTTGTTCTCCGCTACATTCCCCTGTTCCGTGAAAGAATTTA
TGGAACGATACATGAAGAAGCCGTACGAAATCAATTTAATGGACGAGTTGACGTTAAAGG
GTGTGACTCAATATTACGCGTTTCTCGAAGAGAAGAATAAAGTTCATTGCCTTAACACTT
TGTTCTCGAAGGTGCAAATCAACCAGTCGATTATATTTTGCAACTCCACTCACCGAGTCG
AGCTTCTTGCCAAGAAGATTACGGAACTGGGCTACTCGTGCTTCTACATACACGCCAGGA
TGAAGCAGGATTACAGAAATCGCGTCTTCCACGATTTTCGTCAGGGCCTGTGCAGGAACC
TGGTGTGCAGCGATCTGTTTACGCGCGGCATCGACATTCAAGCCGTCAACGTCGTCATCA
ACTTCGATTTTCCGAAGATGTCGGAGACTTACCTTCACCGAATCGGCAGATCCGGTCGAT
ACGGTCACCTCGGTTTGGCTATTAATCTCATCACGTACGCCGACAGATTTAATCTGAAGG
CCATCGAGGAAGAACTGCACACGGACATCAAGCCCATTCCGCCTGATTTACCAATTCAAA
TTTCTACTGAACTACAAGTAGAAGTATCAATCTACAATACCTGTCAAAACGACTTCAAGT
GGTATCAGGAAATGAACGTCTGAA

InterProScan

ProSiteProfiles	Helicase_ATP-bd (IPR014001) - T[1-51] 10.949
SUPERFAMILY	P-loop_NTPase (IPR027417) - T[1-52] 3.32E-8 - T[57-215] 1.15E-44
ProSiteProfiles	Helicase_C (IPR001650) - T[61-221] 22.828
CDD	Helicase_C (IPR001650) - T[62-190] 4.22777E-38
Pfam	Helicase_C (IPR001650) - T[75-182] 2.9E-27
SMART	Helicase_C (IPR001650) - T[101-182] 2.1E-27

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
IF4A3_HUMAN	38.356 %	171	5.27E-51
IF4A1_HUMAN	39.269 %	144	6.21E-41
DDX6_HUMAN	78.341 %	375	5.77E-130