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TRANSCRIPT CARD

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  1. Transcript 'KH2012:KH.C12.200.v1...' > 
  2. EST 'AHC0AAA229YP13_RM1' > 
  3. Transcript 'Mooccu.CG.ELv1_2.S22...' > 
  4. Transcript 'Cisavi.CG.ENS81.R19....' > 
  5. Transcript 'Boschl.CG.Botznik201...'

Transcript Model

Transcript Id

Boschl.CG.Botznik2013.chrUn.g00961.01.t

Possible name(s)

AP002373.1; RBM11; RBM7

Gene model

Boschl.CG.Botznik2013.chrUn.g00961

Location

chrUn [6,231,477 / 6,234,804]

Sequences

Amino acid sequence

Length: 314

>Boschl.CG.Botznik2013.chrUn.g00961.01.p
MSCPRVSSRMSCSSRPTPTQFRDEVKRITTVHRITYSRTHRVRQADIVIGYACKPASHTR
LLWTQEHAFRSICLDLEIENRFMTSPVWAFIVPRNAWLMIPFLILQSYRTIVIMAQVNDD
DRTVWVGNLDRRVTEEILWELFLQAGPLKSAKIPKDHKTSTSKSFAFVVFRHQVSVGYAI
ELLDRIRLYDLPLQLCRKIKPTGDSAATMKSPIRILKKNIGVKRFSTDMPVCAPHHAMMQ
MMSSSHVMKSHAMLMPHRPKVPHLTAPHNCNESQIPYSRRWRQCQMRRRHLLPDRLRTES
HRHGPYIRRSPHRR

Nucleotide sequence

Length: 945

>Boschl.CG.Botznik2013.chrUn.g00961.01.t
TATGTCGTGTCCACGTGTGTCAAGTCGCATGTCGTGTTCAAGTAGGCCAACTCCAACACA
GTTTAGAGACGAAGTCAAGCGCATAACCACGGTACATCGCATCACGTATTCACGGACGCA
TCGAGTGAGGCAGGCTGATATAGTGATCGGTTATGCCTGCAAACCTGCAAGCCATACGCG
TCTGCTCTGGACACAGGAACACGCGTTTCGCAGCATCTGCTTGGATTTGGAAATAGAAAA
CCGCTTCATGACTTCGCCCGTCTGGGCATTTATCGTTCCGAGAAATGCATGGTTGATGAT
CCCATTTTTAATATTACAGTCCTATCGCACCATAGTTATCATGGCTCAAGTAAATGATGA
TGATCGTACCGTTTGGGTGGGGAATTTGGATCGCCGAGTCACCGAAGAGATTCTGTGGGA
ATTATTTTTGCAAGCAGGACCTTTGAAGTCTGCGAAAATACCGAAAGATCACAAAACAAG
CACATCAAAAAGCTTTGCGTTCGTAGTATTTCGGCATCAGGTATCTGTCGGATATGCGAT
TGAATTGTTGGATCGAATAAGATTGTACGATTTGCCATTACAATTATGTCGGAAGATCAA
ACCGACCGGTGATAGCGCAGCTACTATGAAATCCCCAATTCGTATTCTGAAGAAAAATAT
AGGCGTGAAACGATTCAGTACTGACATGCCCGTGTGCGCACCCCATCATGCAATGATGCA
AATGATGTCCTCATCTCATGTTATGAAATCGCATGCTATGTTGATGCCACATCGTCCCAA
AGTTCCTCATCTGACTGCTCCGCATAACTGCAATGAAAGTCAGATTCCATACAGTCGAAG
ATGGCGACAATGTCAAATGCGAAGAAGACATTTGTTACCGGACCGTTTGCGTACGGAAAG
CCACAGGCATGGGCCGTATATCAGACGAAGCCCTCACCGTCGATA

InterProScan

SUPERFAMILY
RBD_domain_sf (IPR035979) - T[103-200] 1.88E-21
Gene3D
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[114-205] 1.3E-19
ProSiteProfiles
RRM_dom (IPR000504) - T[122-198] 13.601
SMART
RRM_dom (IPR000504) - T[123-196] 2.2E-16
Pfam
RRM_dom (IPR000504) - T[124-190] 3.8E-14

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SF3B4_HUMAN 41.772 % 80.5 5.59E-17
RBM7_HUMAN 53.012 % 90.9 3.03E-21
RBM11_HUMAN 60 % 89.4 1.45E-20