Aniseed - Transcript Card

Transcript Model

Transcript Id

Boschl.CG.Botznik2013.chrUn.g01019.01.t

Possible name(s)

MSI1; RBM24; RBM38

Gene model

Boschl.CG.Botznik2013.chrUn.g01019

Location

chrUn [6,645,975 / 6,649,612]

Sequences

Amino acid sequence

Length: 152

>Boschl.CG.Botznik2013.chrUn.g01019.01.p
MTSAATTNYFTAAPGHQAINSAGKPVNMTHHAQKDTTFTKIFVGGLPYHTTDASLRKYFE
QFGEIDEAVVITDRLSSCSKGYGFVTMADKYAAERACKDANPVIDGRKANVNLAYIGAKP
RVAPQTAAALAVRQSPYTILHQPMAATQAPYG

Nucleotide sequence

Length: 456

>Boschl.CG.Botznik2013.chrUn.g01019.01.t
TGACAAGTGCAGCTACTACCAACTATTTCACGGCAGCTCCCGGTCACCAGGCGATTAATA
GTGCTGGCAAGCCTGTTAACATGACGCACCATGCTCAGAAGGACACTACTTTTACTAAGA
TATTCGTGGGCGGACTTCCCTACCACACGACGGACGCTTCTCTCAGGAAATATTTCGAGC
AATTCGGAGAAATTGACGAAGCTGTGGTCATCACAGATAGATTGTCGTCATGTTCGAAAG
GCTACGGATTTGTTACAATGGCGGATAAATACGCAGCAGAACGGGCATGCAAAGACGCGA
ATCCAGTCATTGATGGCAGGAAAGCGAACGTAAACCTCGCCTACATCGGAGCGAAACCCA
GAGTGGCACCACAAACCGCTGCAGGTCTGGCCGTTCGGCAGTCGCCCTACACGATTCTTC
ATCAGCCGATGGCGGCCACGCAAGCACCATACGGGC

InterProScan

Gene3D	Nucleotide-bd_a/b_plait_sf (IPR012677) - T[11-123] 3.8E-26
SUPERFAMILY	RBD_domain_sf (IPR035979) - T[17-121] 2.42E-25
ProSiteProfiles	RRM_dom (IPR000504) - T[39-116] 16.398
SMART	RRM_dom (IPR000504) - T[40-112] 1.1E-21
Pfam	RRM_dom (IPR000504) - T[41-101] 2.6E-15

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
RBM38_HUMAN	78.095 %	173	2.75E-55
RBM24_HUMAN	70.69 %	171	2.4E-54