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TRANSCRIPT CARD

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  1. Transcript 'Harore.CG.MTP2014.S4...' > 
  2. Transcript 'Boschl.CG.Botznik201...' > 
  3. Region 'REG00001386' > 
  4. Molecular Tool 'Wnt5-MO (Ikuta 2010)' > 
  5. Transcript 'Boschl.CG.Botznik201...'

Transcript Model

Transcript Id

Boschl.CG.Botznik2013.chrUn.g02450.01.t

Possible name(s)

GAPVD1; RABGEF1; RIN3

Gene model

Boschl.CG.Botznik2013.chrUn.g02450

Location

chrUn [16,012,101 / 16,013,187]

Sequences

Amino acid sequence

Length: 361

>Boschl.CG.Botznik2013.chrUn.g02450.01.p
MIKQCRAFMDKLIANKAMKVDAQAELVQDFYEVMANRIGTHQVFGKYSSEKDRDRIMDNI
EKFVMTRVYRTVFCSDQTDDESRDLEVQKKIRSLHWVTTDMLDAQFKEDVPNVTAAMDSA
ITAIIEMDSKRAPQDKLSCITRCSKAIFEALKHSKENETPASADDFLPALIYVVLKANPP
MLKSNISYVTRFSNPVRLMAGEDAYYFTNLCCAVEFIESGLNASSLSLTEEEFDDYMSGN
FAKLQNTVKHPEPGRDHRMCPGLELMYKNLNDLADLDQRMDALFADAVDLQRDIQLHSQF
VRESAAEELAKPVPDMSKVKRDQDNEVLELNKFRHTHSDIVSALDAEIPSDLPPPLLPVH
K

Nucleotide sequence

Length: 1,086

>Boschl.CG.Botznik2013.chrUn.g02450.01.t
TGATCAAGCAATGTCGCGCGTTTATGGACAAACTCATAGCGAACAAAGCAATGAAAGTGG
ACGCCCAGGCGGAACTGGTGCAGGATTTTTACGAAGTGATGGCGAATCGTATCGGAACCC
ATCAAGTCTTCGGCAAATATTCTTCGGAAAAAGACAGAGATCGCATCATGGACAATATCG
AGAAATTCGTAATGACACGAGTTTATCGGACTGTGTTCTGCAGCGATCAGACGGACGACG
AAAGTCGCGACTTGGAAGTGCAGAAGAAAATCCGCAGCTTGCACTGGGTCACCACGGATA
TGCTGGATGCCCAGTTCAAAGAGGATGTCCCGAACGTGACCGCCGCGATGGATTCAGCAA
TCACCGCCATTATAGAGATGGATTCCAAGCGAGCGCCTCAAGATAAACTATCTTGTATTA
CAAGATGTAGCAAAGCGATTTTCGAAGCGCTCAAACACTCGAAAGAAAACGAGACGCCAG
CCAGCGCTGATGACTTTCTGCCGGCTTTAATATACGTGGTGCTAAAAGCCAACCCGCCGA
TGCTCAAATCTAACATCAGTTACGTCACAAGGTTTTCAAATCCTGTCAGGCTGATGGCCG
GCGAAGATGCCTACTACTTCACAAACCTTTGCTGCGCCGTCGAGTTTATCGAAAGCGGAC
TCAACGCGTCCAGCTTGTCTCTGACGGAAGAGGAGTTTGACGATTACATGAGCGGGAACT
TCGCCAAGCTGCAAAACACTGTGAAACATCCCGAGCCCGGCAGAGACCACCGCATGTGCC
CAGGTTTGGAGTTGATGTACAAAAATTTAAATGATCTCGCCGACTTAGATCAAAGGATGG
ATGCGCTTTTTGCAGATGCCGTCGACCTGCAACGGGACATTCAGTTGCACTCGCAGTTCG
TGAGGGAGTCTGCAGCTGAGGAACTCGCGAAACCGGTGCCCGACATGAGCAAAGTCAAAC
GCGACCAGGACAATGAAGTGCTCGAATTGAATAAGTTCCGACACACGCATAGCGACATTG
TATCGGCGCTTGATGCGGAGATCCCGTCTGATCTTCCACCCCCTTTACTGCCCGTGCATA
AGTGAA

InterProScan

SUPERFAMILY
VPS9_dom_sf (IPR037191) - T[2-238] 1.31E-66
Gene3D
VPS9_dom_sf (IPR037191) - T[77-248] 1.5E-64
ProSiteProfiles
VPS9 (IPR003123) - T[81-226] 37.361
SMART
VPS9 (IPR003123) - T[116-235] 2.5E-24
Pfam
VPS9 (IPR003123) - T[119-219] 9.8E-28

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
GAPD1_HUMAN 29.954 % 100 4.86E-23
RABX5_HUMAN 45.289 % 280 1.4E-88