- Transcript 'KH2012:KH.S437.6.v1....' >
- Transcript 'KH2012:KH.C11.533.v2...' >
- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chrUn.g03850.01.t
Possible name(s)
ATRX; RAD54L; RAD54L2
Gene model
Location
chrUn [24,874,448 / 24,877,949]
Amino acid sequence
Length: 1,166
>Boschl.CG.Botznik2013.chrUn.g03850.01.p
MNLSRKGDAAKRRRIDSDSSVEIQPKIEKPFDSDEAENWNPNPHLKRATSAKTQPTIAKS
PNKMGRKNIRKVLDDAEISQSTQKAKREEIERRKRLMRLSDAEEVMDVITIDDDTSEKIV
KKVTMPLTLSKDPHIEIDPEMVKFLKPHQKEGIKFIWNNLIEKVAFAETGKGNGCILSHC
MGLGKTLQTISFLHAVLLSEHLKYLNTALVLCPFITVNNWVAEFDKWLPAAVRNLYVRDL
DSLKSEHERMARLQEWKTTGGVLIVGYSLFRSLLRVKKKADAVTNPIWKELLLGPDILVC
DEGHILKNASTALAGFVGQVKTRRKLILTGTPLQNNMVEYHCMVSLVKPSLLGDLKEFKN
RFVNPIENGQHVDSTARDVRLMKKRAHVLHELLAGCVQRKDYTYLKDHLKPKYEYTLKVR
LSDLQIRLYKRYLSLKHTGDLKAHKTCLFRDFNKLLLIVCHPRCLVMHKEMHTKALVEND
DEEDDDDGGGGWSSDDSIIQVYDDDEEIPEPVIPNPETLEDIHALSRRKLRLFIKSKSGK
ETAVKSKKKLIGMAEKYLDENFCKTREFEESLKGKSVPELKALITQHGGSFVGCSEKIDL
VNLLKSLMITETVADAEWFENIMPSQEKLYYANDHGAKIVLMLKILQGANRLDEKVVLFS
QSLLSLDLIEQVLHSDSKPDAARETRGNSTKWVKNKDYYRIDGSIPSNVRSKIIDDFNDK
KNDRGRFLLVSTRSGSMGVNLVGASRAIVFDASWNPSNDIQSIFRIYRFGQTKPCFIYRL
VAQGTMEEKVYERQVVKRSLSFRVVDEQQINRHFRAADINELYAFKPDMTKRKKDAVPEC
APPRDALLASIINSTDLVVSYHEPDTLLDHQVAEELSAADRKAAWEEFARDQPSTFETHL
ETMPRKAMERLKSLGLNLLKSIDGNVSQIQDKPLDKMITQRRMECRGVSTEDVTMYALNY
KLNSHILRRRQENLKRAVKPYLDSVEMAIRDRFLHSNSGYPQVTVAGASGSSLAGVIPNG
NPQQDRRNPHAATTSIPNLFPRYQGNYRGQSNPTTASQRGVGTNGIFRPQSGVGPRAYQP
RASTPRTDYRPRGRRRSTNVRGYAPGINQPRGAVPRPAFAPNQNRARGGFRPRQQGPEDL
RFLDPTRRPPYRVPTPTRFPPYGKKS
Nucleotide sequence
Length: 3,501
>Boschl.CG.Botznik2013.chrUn.g03850.01.t
TGAATCTATCACGCAAAGGTGACGCTGCTAAAAGAAGGAGAATTGATTCTGACAGTTCAG
TCGAGATTCAGCCGAAGATTGAAAAACCTTTCGACAGCGACGAGGCAGAAAACTGGAACC
CGAACCCGCACTTGAAACGAGCGACGTCGGCAAAAACTCAGCCCACGATCGCCAAGTCGC
CCAACAAGATGGGTCGGAAAAACATACGCAAAGTCTTGGACGACGCGGAGATCAGTCAGT
CGACGCAGAAAGCTAAAAGAGAGGAAATTGAGCGTAGAAAACGTTTGATGCGTCTCAGTG
ATGCAGAGGAGGTAATGGATGTTATCACCATCGATGATGATACTAGCGAGAAAATTGTTA
AAAAAGTAACGATGCCGTTAACATTATCGAAAGACCCACATATCGAAATAGATCCGGAAA
TGGTGAAGTTCTTAAAACCCCACCAGAAGGAGGGCATCAAATTCATATGGAATAATCTCA
TTGAAAAGGTGGCGTTTGCCGAGACCGGAAAAGGCAACGGCTGCATATTATCGCACTGTA
TGGGGCTTGGCAAGACGCTACAAACAATCTCTTTTCTGCACGCCGTGCTCTTGAGCGAGC
ATCTGAAATATCTGAACACGGCGCTGGTCCTGTGTCCTTTCATCACTGTCAACAATTGGG
TGGCCGAGTTTGATAAGTGGCTTCCGGCCGCCGTTCGAAATCTGTATGTTCGTGATCTCG
ATTCTCTGAAATCCGAGCACGAACGGATGGCCAGGCTTCAGGAATGGAAAACGACAGGCG
GTGTGCTTATCGTCGGGTACAGCCTGTTCCGTTCGTTGCTTCGAGTGAAAAAGAAAGCCG
ACGCTGTCACCAATCCGATTTGGAAGGAACTTTTGCTCGGGCCCGACATACTAGTGTGTG
ATGAAGGTCACATTTTGAAGAACGCGTCGACAGCGCTCGCGGGATTCGTGGGCCAAGTGA
AGACCCGGAGGAAGCTGATACTGACGGGGACGCCGCTTCAGAACAACATGGTCGAGTATC
ACTGCATGGTCAGTCTGGTGAAGCCGAGTCTGCTCGGAGATTTGAAGGAGTTTAAGAACC
GTTTTGTGAACCCCATCGAAAACGGGCAGCACGTCGACTCGACAGCCAGAGACGTGCGTC
TGATGAAGAAACGTGCGCATGTACTGCACGAGCTTCTGGCCGGCTGCGTACAGAGGAAGG
ATTACACCTATCTCAAGGACCACCTCAAGCCGAAATACGAGTACACGTTGAAAGTCAGGT
TGTCGGACTTGCAGATACGCCTTTACAAGAGGTACCTCTCGCTCAAACACACGGGCGATT
TGAAGGCTCACAAAACCTGCCTCTTTCGCGATTTTAACAAGCTCCTGTTGATCGTGTGTC
ATCCGCGGTGTCTGGTGATGCATAAGGAGATGCACACAAAAGCACTCGTTGAAAACGATG
ACGAGGAAGACGATGACGACGGAGGAGGAGGATGGTCTTCCGATGATTCGATCATACAAG
TGTACGATGATGATGAAGAGATACCAGAGCCTGTAATCCCGAATCCCGAGACGCTCGAAG
ATATCCATGCGTTGTCGCGTAGGAAATTACGGCTTTTTATCAAAAGCAAAAGCGGTAAGG
AGACAGCGGTGAAAAGCAAGAAGAAATTGATCGGAATGGCTGAAAAGTATTTGGATGAGA
ATTTCTGTAAGACGCGGGAATTCGAGGAGTCGTTGAAAGGCAAGTCGGTCCCCGAATTGA
AAGCGCTGATCACGCAGCACGGCGGCAGCTTTGTGGGCTGCAGCGAGAAGATAGACCTCG
TTAACCTGTTGAAGAGTTTGATGATAACGGAGACCGTAGCGGACGCTGAGTGGTTTGAGA
ATATAATGCCATCGCAGGAGAAATTGTACTACGCGAACGATCATGGAGCCAAAATCGTTC
TCATGCTGAAAATCTTGCAGGGAGCGAACAGGCTTGACGAAAAAGTCGTGCTTTTTTCAC
AATCTCTGCTGAGTCTCGATTTGATCGAGCAAGTCCTTCATTCCGATTCGAAACCGGACG
CTGCTCGCGAGACAAGGGGTAATTCCACAAAGTGGGTGAAAAACAAAGACTATTACCGCA
TCGACGGTTCCATCCCGAGCAACGTACGATCGAAAATCATCGACGATTTTAACGATAAAA
AGAACGACCGCGGAAGATTCCTGTTGGTTTCGACGCGTTCCGGGTCGATGGGGGTGAATT
TAGTAGGGGCCAGTCGCGCGATCGTGTTCGACGCTTCGTGGAACCCGTCGAACGATATCC
AGTCGATATTTCGGATTTATCGTTTCGGCCAGACAAAACCTTGTTTTATTTACCGCCTGG
TAGCGCAAGGCACGATGGAAGAAAAGGTTTACGAGAGGCAAGTCGTCAAACGGTCGCTAT
CGTTTCGCGTCGTCGACGAACAGCAGATAAACAGGCATTTCAGAGCGGCCGACATCAATG
AGCTGTACGCTTTCAAGCCCGACATGACCAAGCGTAAAAAGGACGCGGTCCCGGAATGCG
CGCCTCCTCGAGATGCGCTTCTGGCGTCGATAATCAACTCCACAGACTTGGTGGTCTCGT
ATCACGAGCCCGACACGTTGCTAGATCACCAGGTCGCCGAAGAACTGTCCGCCGCCGACA
GGAAAGCGGCTTGGGAAGAGTTTGCGAGGGACCAGCCTTCTACATTCGAGACTCATCTTG
AGACGATGCCTCGCAAGGCGATGGAGAGATTGAAATCGCTGGGCCTGAATCTGTTGAAAT
CGATCGATGGTAATGTGTCGCAAATCCAGGACAAGCCGTTGGATAAGATGATCACGCAAA
GGAGAATGGAATGCCGCGGTGTATCTACCGAGGACGTTACGATGTACGCTCTTAATTACA
AGCTCAACAGTCATATTCTGCGGAGGCGCCAGGAAAATCTGAAGAGAGCGGTCAAACCCT
ATCTGGACTCTGTCGAAATGGCGATTCGTGACCGATTTCTTCACTCTAATTCTGGATACC
CGCAAGTGACTGTCGCTGGTGCTAGCGGCAGTTCATTGGCCGGTGTTATCCCTAACGGTA
ATCCTCAACAAGATCGGAGAAACCCACATGCGGCCACAACGAGCATACCCAATCTGTTTC
CGAGGTATCAAGGTAACTATCGCGGTCAGAGCAACCCGACTACGGCCTCCCAGCGTGGAG
TCGGTACGAATGGGATCTTTCGTCCGCAAAGTGGCGTAGGACCTAGGGCCTATCAGCCCA
GAGCCAGTACGCCTAGGACTGATTATCGACCAAGAGGAAGACGTAGGAGCACTAATGTCC
GCGGATACGCTCCTGGCATCAATCAACCCCGCGGTGCTGTGCCTCGCCCCGCTTTCGCGC
CGAACCAAAATCGTGCCAGAGGCGGGTTTCGCCCGCGTCAACAGGGCCCGGAGGATTTGA
GATTTTTAGACCCCACGCGCAGACCTCCATACCGTGTGCCTACGCCTACCCGTTTTCCGC
CGTATGGAAAGAAGAGTTGAC
| Gene3D |
SNF2-like_sf (IPR038718) - T[112-399] 9.9E-75 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[129-399] 2.84E-46 - T[405-469] 9.15E-46 - T[506-522] 9.15E-46 - T[629-823] 9.15E-46 |
| SMART |
Helicase_ATP-bd (IPR014001) - T[141-358] 2.0E-22 |
| Pfam |
SNF2_N (IPR000330) - T[160-437] 5.7E-50 |
| ProSiteProfiles |
Helicase_ATP-bd (IPR014001) - T[166-350] 16.815 |
| CDD |
Helicase_C (IPR001650) - T[630-778] 1.03081E-18 |
| ProSiteProfiles |
Helicase_C (IPR001650) - T[644-818] 14.049 |
| Pfam |
Helicase_C (IPR001650) - T[649-770] 4.5E-12 |
| SMART |
Helicase_C (IPR001650) - T[667-770] 2.3E-17 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ATRX_HUMAN | 45 % | 364 | 1.25E-104 |
| ARIP4_HUMAN | 35.98 % | 254 | 4.64E-69 |
| RAD54_HUMAN | 31.579 % | 162 | 6.63E-41 |