- Clone 'ma312h11' >
- Clone 'ma206k14' >
- Clone 'cieg018p24' >
- Transcript 'KH2012:KH.C2.88.v1.A...' >
- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chrUn.g05814.01.t
Possible name(s)
YBX1; YBX2; YBX3
Gene model
Location
chrUn [38,565,832 / 38,568,382]
Amino acid sequence
Length: 132
>Boschl.CG.Botznik2013.chrUn.g05814.01.p
MSDAITTTETISEDDVKSEKKVLATHCTGVVKWFNVRNGYGFINRDDNKEDVFIHQTAII
RNNPRKYLRSVGDGEIVEFDVVEGEKGLPEAANVTGPDGAPVQGSKYAADRRRYRPQYRR
RPRNAIAPVSTP
Nucleotide sequence
Length: 399
>Boschl.CG.Botznik2013.chrUn.g05814.01.t
TGTCGGACGCCATTACAACCACAGAAACCATCTCTGAAGATGATGTGAAGTCCGAGAAGA
AAGTTCTCGGCACACACTGCACTGGTGTTGTGAAGTGGTTCAATGTCCGTAACGGCTATG
GATTTATCAACCGCGATGACAACAAGGAAGACGTGTTCATCCATCAGACCGCCATAATTC
GCAACAACCCGCGCAAGTACTTGCGCAGTGTTGGGGACGGCGAAATTGTCGAGTTTGACG
TGGTTGAAGGCGAGAAGGGCTTACCCGAAGCTGCGAACGTAACTGGACCGGACGGTGCTC
CAGTCCAGGGCAGCAAGTATGCAGCGGATCGCAGAAGATACCGGCCACAGTATCGCCGGC
GTCCAAGAAATGCAATCGCGCCTGTGAGTACACCATAGT
| SUPERFAMILY |
NA-bd_OB-fold (IPR012340) - T[23-96] 1.93E-21 |
| Pfam |
CSP_DNA-bd (IPR002059) - T[27-96] 6.1E-24 |
| CDD |
CSP_DNA-bd (IPR002059) - T[27-96] 5.2714E-24 |
| SMART |
CSD (IPR011129) - T[28-97] 4.4E-21 |
| PRINTS |
CSP_DNA-bd (IPR002059) - T[29-44] 5.5E-20 - T[50-59] 5.5E-20 - T[69-87] 5.5E-20 |
| ProSitePatterns |
Cold-shock_CS (IPR019844) - T[40-59] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| YBOX1_HUMAN | 82.609 % | 160 | 2.05E-49 |
| YBOX3_HUMAN | 80.808 % | 161 | 1.71E-49 |
| YBOX2_HUMAN | 73.737 % | 155 | 2.61E-47 |