Aniseed - Transcript Card

Transcript Model

Transcript Id

Boschl.CG.Botznik2013.chrUn.g08255.01.t

Possible name(s)

TCEA1; TCEA2; TCEA3

Gene model

Boschl.CG.Botznik2013.chrUn.g08255

Location

chrUn [53,737,733 / 53,743,178]

Sequences

Amino acid sequence

Length: 262

>Boschl.CG.Botznik2013.chrUn.g08255.01.p
MVAKKTTEQAAEVLRALQRIPMNLDTLQKTRIGMSVNSVRKQTSNEEVASVAKQLIKTWK
RLVSEAPAKKTDSARKNPKEESSSKEKKTKQGYESPEKEEETPTIATLSSSNGSDIASTL
GSTNNPIRDKCREMLLRGLDTDSSSEAMKSRYRFLAAMIEEAIYQEFKDVGMKYKNRVRS
RYSNLKDAKNPQLKENVVKGVISPEKLAKMTPDEMASSEMKLMREKFEEENIKDHQMATN
EGTKTDMFVCGKCKGRACTYNQ

Nucleotide sequence

Length: 786

>Boschl.CG.Botznik2013.chrUn.g08255.01.t
AATGGTTGCGAAGAAGACAACGGAACAGGCTGCTGAAGTTTTGAGAGCCCTGCAGCGTAT
ACCCATGAATCTAGATACGTTACAAAAAACGCGCATTGGAATGTCTGTGAACAGCGTACG
GAAACAAACGTCCAACGAAGAAGTAGCTTCTGTGGCGAAGCAACTCATCAAAACGTGGAA
AAGGCTTGTATCAGAAGCCCCTGCTAAAAAGACAGACTCGGCCCGTAAAAATCCAAAGGA
AGAGTCAAGTAGTAAAGAGAAAAAGACGAAACAGGGATATGAATCTCCAGAAAAGGAGGA
GGAAACGCCTACGATCGCAACTTTGAGCTCCAGTAATGGATCTGACATCGCGTCGACATT
AGGATCGACTAATAACCCCATTAGGGATAAATGCAGAGAGATGCTGCTGCGGGGACTCGA
TACAGATTCGGGTTCGGAAGCCATGAAGTCCAGATATCGCTTTTTGGCGGCGATGATCGA
AGAAGCCATTTATCAAGAATTCAAAGACGTCGGGATGAAATACAAGAATCGGGTCCGCAG
CCGGTACAGCAATTTGAAAGACGCTAAGAATCCTCAATTGAAAGAAAACGTCGTGAAAGG
AGTTATATCGCCGGAAAAACTGGCCAAGATGACCCCCGAGGAGATGGCGAGTTCTGAAAT
GAAGCTTATGAGGGAGAAGTTCGAAGAAGAAAACATCAAAGACCATCAGATGGCGACGAA
CGAGGGTACAAAGACGGACATGTTTGTATGCGGGAAATGTAAAGGAAGGGCCTGTACATA
CAATCA

InterProScan

PIRSF	TF_IIS-typ (IPR035100) - T[1-262] 5.0E-74
ProSiteProfiles	TFIIS_N (IPR017923) - T[1-66] 24.213
Gene3D	TFIIS/LEDGF_dom_sf (IPR035441) - T[1-90] 2.2E-21
SMART	TFIIS/CRSP70_N_sub (IPR003617) - T[1-65] 3.0E-16
SUPERFAMILY	TFIIS/LEDGF_dom_sf (IPR035441) - T[3-76] 2.09E-20
Pfam	TFIIS_N (IPR017923) - T[13-63] 1.6E-13
SUPERFAMILY	TFIIS_cen_dom_sf (IPR036575) - T[110-219] 2.75E-31
Gene3D	TFIIS_cen_dom_sf (IPR036575) - T[114-217] 4.8E-36
SMART	TFIIS_cen_dom (IPR003618) - T[125-226] 1.2E-36
Pfam	TFIIS_cen_dom (IPR003618) - T[125-235] 9.2E-37
ProSiteProfiles	TFIIS_cen_dom (IPR003618) - T[127-243] 37.584

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
TCEA2_HUMAN	44.656 %	228	1.95E-74
TCEA1_HUMAN	46.691 %	225	3.33E-73
TCEA3_HUMAN	38.889 %	189	1.42E-58