Aniseed - Transcript Card

Transcript Model

Transcript Id

Boschl.CG.Botznik2013.chrUn.g08854.01.t

Possible name(s)

SLCO4A1; SLCO4C1; SLCO5A1

Gene model

Boschl.CG.Botznik2013.chrUn.g08854

Location

chrUn [57,483,331 / 57,488,755]

Sequences

Amino acid sequence

Length: 237

>Boschl.CG.Botznik2013.chrUn.g08854.01.p
IDIDESSAFWIGNWWLGFLIGGVSVIVISVPIILFPKQLPNTSRFRVGREDEIHQNAEAL
QARGDDDFGKRFKDIPRCLKAVLKNPTLVCVSIAGAMDSGSIVAISTFGPKFVESIFRFP
PSQAGLYFGIGAIVAAFASHLLGGYLVTRLKPGIRWMLKFAIGCACMALCCTFVFMMRCE
TPDVPGVNRPFPGESTYSCEGSCGCSTDLYDPICGADGLTYLSLCEANCTLTDSKVC

Nucleotide sequence

Length: 715

>Boschl.CG.Botznik2013.chrUn.g08854.01.t
GAATCGACATCGACGAGAGCTCCGCGTTTTGGATCGGCAATTGGTGGCTCGGATTCCTCA
TTGGCGGCGTTTCCGTTATCGTGATTTCAGTGCCGATTATACTTTTCCCGAAGCAACTTC
CCAATACGTCGCGATTCCGCGTGGGACGGGAGGACGAGATCCATCAGAATGCGGAAGCTT
TACAAGCGAGGGGTGATGATGATTTCGGGAAAAGGTTCAAGGATATTCCGAGGTGTTTGA
AGGCCGTTCTTAAAAATCCCACTCTCGTATGCGTATCAATAGCGGGAGCAATGGACTCTG
GGAGCATCGTTGCAATTTCCACGTTCGGTCCGAAATTTGTGGAATCGATATTCCGTTTCC
CTCCGTCTCAAGCCGGACTCTACTTCGGAATCGGTGCGATTGTTGCTGCCTTCGCTTCCC
ATCTTCTTGGAGGATATTTGGTGACTCGGCTAAAGCCGGGAATTCGCTGGATGCTGAAAT
TCGCTATCGGGTGCGCGTGCATGGCGCTGTGCTGCACATTCGTGTTTATGATGAGATGCG
AAACCCCAGATGTTCCGGGTGTCAACCGTCCGTTTCCCGGAGAATCGACATACAGCTGTG
AAGGAAGTTGTGGCTGTAGCACAGATCTTTATGATCCTATTTGCGGGGCTGACGGCTTAA
CGTATCTTTCACTATGCGAAGCCAATTGCACTCTCACAGACTCGAAAGTATGTTG

InterProScan

PANTHER	OATP (IPR004156) - T[2-233] 3.3E-66
Pfam	OATP (IPR004156) - T[3-214] 5.0E-47
SUPERFAMILY	MFS_trans_sf (IPR036259) - T[12-175] 4.19E-19
CDD	MFS_dom (IPR020846) - T[86-177] 4.66385E-6
ProSiteProfiles	Kazal_dom (IPR002350) - T[193-237] 8.641
SUPERFAMILY	Kazal_dom_sf (IPR036058) - T[196-231] 9.56E-9
Pfam	Kazal_dom (IPR002350) - T[202-233] 5.7E-8

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
SO4A1_HUMAN	35.021 %	157	3.42E-44
SO4C1_HUMAN	32.766 %	140	2.19E-38
SO5A1_HUMAN	32.937 %	132	1.91E-35