Aniseed - Transcript Card

Transcript Model

Transcript Id

Boschl.CG.Botznik2013.chrUn.g09780.01.t

Possible name(s)

ARFGEF1; ARFGEF2; FBXO8

Gene model

Boschl.CG.Botznik2013.chrUn.g09780

Location

chrUn [63,208,385 / 63,209,447]

Sequences

Amino acid sequence

Length: 353

>Boschl.CG.Botznik2013.chrUn.g09780.01.p
MGQLLSNRGGVGGSNSSPASNESSSGSGTAQNGQNHLYRPSFLWQIFKHRRARGLRATVK
NRNSIENFPDLYLLPPEIGLEVLKNLNATDLCLAACVWSDLANDEVLWEGLCMNSWGHCS
AYKTWKEEGKSFKKLYLLLDEGCLTFNAEPMWGLQYLTRNGVLNTEPSEIALFFNSTNQL
CWQKVRQYLNINPDVLDELIKLQSFKNQFLPNALRKFFQAVDSPISQGEYLHLLLDKFAV
RFCNDNPGLSLVPEIVCILCYSLILLSVDLTSPQVKNKMSKREFVRNIRSALGEYRRDEL
HDAPGNNQVHAIPPEMAARLQAVAAVDSDFAGHLYDNIYLVGHVAPQRWRDDA

Nucleotide sequence

Length: 1,062

>Boschl.CG.Botznik2013.chrUn.g09780.01.t
AATGGGACAACTGCTTTCAAACCGTGGTGGTGTTGGTGGCAGCAATTCGTCTCCTGCATC
TAATGAAAGTTCTTCAGGTTCCGGAACAGCACAGAACGGACAAAATCATTTATACAGGCC
CAGCTTCTTGTGGCAAATATTCAAACATCGGCGTGCAAGAGGCTTGCGCGCTACGGTGAA
AAATCGGAATTCCATCGAGAATTTTCCTGACCTGTACCTTCTCCCGCCGGAGATAGGATT
AGAAGTGCTGAAAAACTTGAACGCGACCGATCTGTGCCTTGCGGCGTGCGTGTGGTCCGA
TCTGGCAAATGATGAGGTTTTGTGGGAAGGGCTTTGCATGAACTCTTGGGGTCATTGCAG
TGCTTATAAAACCTGGAAAGAAGAAGGGAAATCCTTCAAAAAGTTATACCTTCTTCTCGA
TGAAGGCTGTTTAACGTTCAATGCTGAACCGATGTGGGGCTTGCAGTACTTAACCCGAAA
CGGGGTTTTGAACACGGAACCATCCGAAATAGCCCTCTTTTTCAACTCCACCAACCAGCT
TTGTTGGCAAAAGGTGCGGCAGTACCTCAACATCAATCCCGACGTGCTGGACGAATTGAT
CAAGTTGCAGAGCTTCAAAAACCAATTCCTCCCCAACGCCCTCCGGAAATTCTTTCAAGC
CGTGGACTCTCCAATATCTCAAGGGGAATACCTCCATCTTCTCCTCGATAAATTTGCGGT
CCGATTCTGCAACGACAATCCGGGTTTGAGCCTCGTGCCCGAAATTGTGTGCATCCTGTG
CTACTCCCTGATCCTGCTTTCCGTGGACTTGACGAGCCCGCAGGTCAAAAATAAGATGTC
TAAAAGAGAGTTTGTGCGTAACATTCGGTCCGCGTTGGGCGAGTATCGCCGAGATGAGCT
ACATGACGCACCTGGGAATAACCAGGTCCACGCGATTCCGCCGGAAATGGCGGCTCGACT
CCAAGCCGTTGCTGCCGTCGACAGCGACTTTGCCGGTCATCTCTATGACAATATTTATTT
AGTGGGTCACGTCGCCCCACAAAGATGGAGGGACGATGCCTG

InterProScan

SUPERFAMILY	F-box-like_dom_sf (IPR036047) - T[58-137] 1.46E-13
ProSiteProfiles	Sec7_dom (IPR000904) - T[128-341] 21.766
SMART	Sec7_dom (IPR000904) - T[132-343] 1.3E-29
SUPERFAMILY	Sec7_dom_sf (IPR035999) - T[136-296] 6.8E-35
Pfam	Sec7_dom (IPR000904) - T[139-290] 1.1E-25
Gene3D	Sec7_C_sf (IPR023394) - T[207-302] 4.5E-17

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
BIG1_HUMAN	31.325 %	93.6	8.83E-21
FBX8_HUMAN	51.761 %	291	1.43E-97
IQEC1_HUMAN	33.117 %	79	5.43E-16