- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chrUn.g09945.01.t
Possible name(s)
CDH13; CDH15; CDH2
Gene model
Location
chrUn [64,320,359 / 64,322,267]
Amino acid sequence
Length: 635
>Boschl.CG.Botznik2013.chrUn.g09945.01.p
MMFLLKGSHNVFSHGAAFVFFIINITALSTLPYASADYGYPDQRLSEGPLYNMVPVFVVQ
IFSMNGSTVWYNISGDYTTEFSINHDTGHIYQIEELDREKKDVYSMIGIAKDAKGHQTEK
PALFKILVTDLNDEVPVFNESTLIGAVAESDEYGPSSSPFMRVEATDADIGFNAIIEYSM
QEGSDTPPTASGSRFLIDSSTGDVRQNVALDYESNPGLLRFTVKATDNGGRIFGSNSVTA
EVVVSVKDSNDHAPIFGSLTGVTLLESSKLGKSLYKMYASDVDEGVNEKVFFEITAGNTD
DTFGIASKLLDSNDSLGQLYLLKPLDYEHSASYILTIKAFNKEASNAADDTYATIQTLKV
TVIDVNEPPIFEDTPYVITITEAPAPTEPIPVLKVSAKDKDFKGNQTVTYDLEDEQQWFT
IDSKTGQISIVGSVDYEAPGVTDGAYRLKVTATDNYDNGPPAHAPEFVDITIYDINDNAP
VPDWAQSQNGDYVVVCDSPPNATIKFIKAADIDSSVNGSKFTFQFDQSVDTEKWGFETIN
SESWNIIAKFTEYNLTSESENVTLIFTITDSGDNPMTGRSTIDVTVCRCDEQFNCAPANT
AEFQHSIIFGMIGVFFAVGIIIFVIDYCQQKARRS
Nucleotide sequence
Length: 1,908
>Boschl.CG.Botznik2013.chrUn.g09945.01.t
TGATGTTTCTTTTGAAAGGCTCACATAATGTATTTTCGCATGGAGCTGCGTTTGTATTCT
TCATTATCAACATTACGGCGCTGTCCACCCTTCCCTATGCTTCAGCGGATTATGGTTATC
CCGACCAAAGACTCTCGGAAGGGCCGCTATATAATATGGTTCCGGTATTTGTGGTTCAAA
TTTTTTCAATGAATGGTTCGACAGTATGGTATAATATATCCGGTGATTATACAACCGAAT
TCAGCATTAATCATGATACTGGACACATCTACCAGATCGAAGAGTTAGATAGGGAAAAGA
AAGACGTTTATAGTATGATTGGGATAGCTAAAGATGCCAAAGGACACCAAACGGAGAAGC
CAGCTTTATTCAAAATTCTTGTTACTGATTTAAATGATGAGGTCCCAGTGTTCAACGAAT
CTACTTTGATTGGAGCCGTGGCCGAAAGCGACGAGTATGGTCCGTCCTCTTCACCATTCA
TGCGAGTTGAGGCAACAGACGCAGATATTGGGTTTAATGCGATAATTGAGTACTCTATGC
AAGAAGGAAGCGACACTCCGCCAACCGCATCGGGGAGTAGATTCCTTATCGACTCATCGA
CAGGAGATGTTAGACAGAATGTCGCCCTTGACTACGAAAGTAACCCAGGGCTGCTGCGAT
TCACTGTGAAGGCCACTGACAATGGTGGTCGCATTTTTGGTTCCAACTCCGTTACGGCAG
AAGTTGTCGTATCTGTCAAAGATTCTAATGATCATGCACCTATTTTCGGCTCTCTCACCG
GTGTAACACTTTTGGAATCTTCGAAACTCGGGAAGTCACTGTACAAAATGTATGCGTCTG
ATGTGGATGAAGGTGTCAACGAAAAGGTATTTTTTGAAATAACTGCCGGAAATACTGATG
ACACTTTTGGTATTGCCTCGAAGCTGCTCGATAGTAACGATAGTCTTGGACAGTTATATC
TTCTAAAACCACTCGACTATGAACATAGTGCAAGTTACATTTTGACGATTAAAGCTTTCA
ATAAAGAGGCATCGAATGCTGCCGATGATACATACGCAACTATTCAAACTTTGAAAGTCA
CGGTGATAGATGTCAACGAACCACCTATTTTCGAAGATACCCCTTACGTAATTACCATTA
CCGAAGCCCCTGCTCCCACTGAACCAATACCAGTTCTCAAAGTATCCGCAAAGGACAAAG
ATTTCAAAGGAAATCAAACAGTTACATACGATTTGGAAGATGAACAACAGTGGTTTACTA
TAGATTCCAAAACCGGACAAATCAGCATCGTAGGATCCGTAGATTACGAAGCACCTGGCG
TTACAGATGGCGCATATCGGCTCAAAGTCACCGCCACCGATAACTACGATAATGGACCAC
CAGCACACGCCCCTGAATTTGTTGATATCACCATTTACGATATCAATGATAACGCGCCTG
TGCCAGACTGGGCTCAAAGTCAAAATGGTGATTATGTAGTCGTCTGCGATAGTCCACCAA
ATGCCACTATTAAATTCATCAAGGCCGCGGATATCGATTCATCAGTAAACGGCAGTAAGT
TCACTTTCCAATTTGATCAATCCGTGGATACAGAGAAGTGGGGTTTCGAAACTATTAACA
GCGAGAGTTGGAACATTATTGCCAAGTTTACTGAATATAATTTGACTTCTGAATCTGAAA
ATGTTACTCTGATATTCACCATCACAGATTCCGGTGACAATCCTATGACCGGAAGGTCTA
CCATAGATGTGACAGTGTGCAGGTGTGATGAACAGTTTAACTGCGCCCCCGCTAACACAG
CCGAATTTCAGCACTCAATCATTTTCGGGATGATCGGTGTTTTCTTTGCTGTTGGCATTA
TAATTTTCGTGATTGATTATTGCCAACAAAAAGCCCGACGCAGCTGAA
| SMART |
Cadherin (IPR002126) - T[56-136] 2.4E-7 - T[163-254] 1.1E-19 - T[277-370] 3.8E-8 - T[395-480] 1.0E-16 |
| SUPERFAMILY |
Cadherin-like (IPR015919) - T[63-138] 6.14E-12 - T[126-257] 6.67E-20 - T[250-364] 7.99E-15 - T[367-481] 2.75E-19 - T[475-587] 1.71E-9 |
| PRINTS |
Cadherin (IPR002126) - T[79-98] 1.6E-19 - T[218-230] 1.6E-19 - T[235-254] 1.6E-19 - T[315-341] 1.6E-19 - T[464-481] 1.6E-19 |
| Pfam |
Cadherin (IPR002126) - T[151-245] 9.9E-11 - T[263-355] 4.1E-12 - T[391-472] 1.6E-12 |
| ProSitePatterns |
Cadherin_CS (IPR020894) - T[244-254] . - T[470-480] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CADH2_HUMAN | 30.189 % | 168 | 7.24E-44 |
| CAD15_HUMAN | 28.305 % | 171 | 6.54E-45 |
| CAD13_HUMAN | 30.241 % | 183 | 1.41E-49 |