- Transcript 'Boschl.CG.Botznik201...' >
- Transcript 'Harore.CG.MTP2014.S1...' >
- Clone 'ma108o11' >
- Clone 'cieg101k13' >
- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chrUn.g14047.01.t
Possible name(s)
SNX18; SNX33; SNX9
Gene model
Location
chrUn [90,601,373 / 90,604,440]
Amino acid sequence
Length: 553
>Boschl.CG.Botznik2013.chrUn.g14047.01.p
MAKNGDRVEMLYAFDGISENHELTLSEGDFVTITDADVGEGWFEGQDANGTVGLFPSGYA
QVVPDAGFENGTDAITPTQQQDLMGSFAPSQDNAGYQGDDYADDDWEASWGAQAVTPAAV
VAPTTQIDRSASQKSTTSVAKVDGDSPKKSGKGGLFGGLFSSFSSTPSEAFVAGESDKVD
TSGKPRIILTMTDGLPMWEYSNKHFTCVVSDPQKASKFSGLKSYITYNITPDDTGKTVTR
RYKHFDWLLEQLTRKFSTIISIPPLPDKQITGRYEDEFIENRRQQLHTWIARMSLHPVVA
ESEVFQHFLRSKDSEKAWKEGKRKAESDVAVGGALCSTIAPLEQYRIELADAEATLQLNT
QFTKNLDDALKQMTAHGAEYARKCAGPLTREYQRTGQCFGAIANAFALDTRETSVPLTNA
IQHTGTTYEEIGNMFHEQSKNDWIPLLDGMNEYKGIISCFPNILGNNKSGIDKQKEIQKL
HLEGKCTSEDVDNAKLRAETLSYAVQAEVNHMQHYRVGDFTEFMRSFTQQQVVFYQNIVA
KLQETASLYENLQ
Nucleotide sequence
Length: 1,662
>Boschl.CG.Botznik2013.chrUn.g14047.01.t
TGGCAAAAAATGGGGACAGGGTGGAAATGCTGTACGCTTTCGACGGCATATCGGAAAATC
ACGAATTGACACTTTCGGAAGGGGATTTCGTTACTATAACAGACGCCGATGTAGGCGAAG
GATGGTTCGAAGGACAAGACGCGAATGGGACTGTCGGACTTTTTCCATCCGGCTACGCTC
AAGTTGTACCTGATGCGGGGTTTGAAAACGGTACCGATGCGATAACCCCCACGCAACAGC
AAGATCTCATGGGCTCTTTCGCTCCCTCGCAAGATAACGCGGGTTATCAAGGCGACGATT
ATGCTGACGATGACTGGGAAGCCTCCTGGGGTGCACAGGCGGTCACGCCTGCTGCTGTAG
TTGCACCCACTACTCAAATTGACAGGTCTGCGTCTCAAAAAAGCACCACTAGCGTCGCAA
AAGTGGATGGCGATTCGCCAAAGAAATCAGGAAAAGGCGGATTGTTCGGTGGTTTATTCT
CATCATTTTCATCCACTCCGTCCGAAGCGTTTGTAGCCGGCGAATCAGACAAAGTCGACA
CATCTGGAAAACCTAGAATTATTCTCACCATGACGGACGGATTACCAATGTGGGAATATT
CCAATAAACATTTCACGTGTGTTGTATCAGATCCGCAGAAAGCCAGTAAGTTCTCGGGCT
TGAAGAGTTATATAACTTACAACATCACGCCTGATGACACCGGTAAAACAGTCACGAGAC
GGTACAAACACTTTGATTGGCTCCTCGAGCAGTTGACGAGGAAATTCAGCACTATCATCT
CCATCCCGCCGCTTCCAGACAAGCAAATCACAGGTCGGTACGAAGACGAATTTATCGAAA
ATCGACGGCAACAGTTACACACATGGATTGCCAGAATGTCCCTACACCCTGTCGTCGCGG
AATCTGAAGTTTTCCAGCATTTTCTCCGTTCGAAAGACTCGGAAAAGGCCTGGAAGGAGG
GAAAACGCAAAGCGGAAAGTGACGTGGCAGTCGGCGGCGCGCTCTGCTCGACCATAGCCC
CGCTTGAGCAGTATAGAATCGAACTGGCGGATGCCGAAGCTACGCTGCAACTCAACACTC
AGTTCACGAAGAATTTGGACGACGCGTTGAAGCAAATGACGGCTCACGGCGCGGAATACG
CACGAAAATGTGCAGGCCCTTTAACGCGGGAATACCAGAGAACTGGACAATGCTTCGGCG
CGATAGCGAACGCTTTTGCTCTAGACACGAGAGAAACGTCGGTACCGTTAACGAATGCTA
TACAGCACACAGGCACTACGTACGAAGAAATCGGAAATATGTTCCACGAACAATCGAAAA
ACGATTGGATTCCGCTATTAGATGGCATGAATGAGTACAAAGGTATAATATCATGCTTTC
CGAATATTCTTGGTAACAACAAGAGTGGCATCGACAAGCAAAAGGAAATACAGAAACTGC
ACCTTGAAGGCAAATGCACGAGTGAGGATGTGGATAATGCAAAATTGCGGGCGGAGACGT
TATCGTATGCAGTACAAGCCGAGGTCAACCACATGCAGCATTACAGGGTCGGCGATTTCA
CGGAGTTCATGAGAAGTTTCACCCAACAACAAGTCGTCTTCTATCAGAATATAGTCGCCA
AGTTGCAAGAAACTGCGAGCCTGTATGAAAACTTGCAATGAT
| ProSiteProfiles |
SH3_domain (IPR001452) - T[3-65] 12.5 |
| SMART |
SH3_domain (IPR001452) - T[6-64] 3.7E-11 |
| SUPERFAMILY |
SH3-like_dom_sf (IPR036028) - T[8-65] 1.44E-12 |
| Pfam |
SH3_domain (IPR001452) - T[12-60] 6.2E-8 |
| PANTHER |
SNX9 (IPR028644) - T[89-549] 1.0E-121 |
| Gene3D |
PX_dom_sf (IPR036871) - T[186-319] 7.6E-40 |
| SUPERFAMILY |
PX_dom_sf (IPR036871) - T[202-313] 3.53E-27 |
| SMART |
Phox (IPR001683) - T[202-312] 2.2E-22 |
| ProSiteProfiles |
Phox (IPR001683) - T[205-316] 17.378 |
| Pfam |
Phox (IPR001683) - T[207-311] 4.7E-21 |
| Pfam |
Sorting_nexin_WASP-bd-dom (IPR019497) - T[315-549] 4.3E-73 |
| Gene3D |
AH/BAR_dom_sf (IPR027267) - T[362-552] 8.5E-67 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SNX33_HUMAN | 33.682 % | 327 | 2.35E-105 |
| SNX9_HUMAN | 44.262 % | 332 | 9.81E-107 |
| SNX18_HUMAN | 36.941 % | 254 | 5.49E-77 |