Aniseed - Transcript Card

Transcript Model

Transcript Id

Boschl.CG.Botznik2013.chrUn.g14570.01.t

Possible name(s)

CADM1; KIRREL3; NPHS1

Gene model

Boschl.CG.Botznik2013.chrUn.g14570

Location

chrUn [94,071,829 / 94,076,014]

Sequences

Amino acid sequence

Length: 223

>Boschl.CG.Botznik2013.chrUn.g14570.01.p
MRSGDDLTVQCTSAGGNPAASISWSIGEKILEGEYQILDDGARNTLRHTLTPEDNGKLLK
CTVTSPAISTPLKTHVRLEVHYPPESIGIEQTPKDGVGEGEEITFICYHTESNPLATLEW
FIGEDRLPHKIGSSQGSIQFHTFTPTTGRAGHSIGLRLQAVRREDATLPIKCLARIPEIG
YDNMATIRPKVNYAPRTVSITITNPLGSPPININPEDVSLSSP

Nucleotide sequence

Length: 669

>Boschl.CG.Botznik2013.chrUn.g14570.01.t
GATGCGATCCGGCGACGATTTGACGGTACAATGCACTTCGGCTGGCGGCAATCCAGCAGC
GTCCATCTCCTGGTCGATGGGCGAAAAGATTCTGGAGGGTGAATACCAAATATTGGACGA
CGGTGCACGTAATACTTTGCGGCACACGCTAACGCCTGAGGACAACGGGAAGCTTTTGAA
GTGTACCGTTACAAGTCCTGCAATTTCGACCCCACTAAAAACACACGTGCGACTGGAAGT
TCACGATCCCCCAGAAAGCATCGGCATAGAACAAACCCCGAAAGACGGAGTGGGAGAAGG
CGAAGAGATTACCTTCATCTGCTACCACACCGAAAGCAACCCATTGGCCACGTTGGAGTG
GTTCATTGGCGAAGACAGACTGCCACACAAGATTGGTAGCAGCCAGGGTAGCATTCAATT
TCACACGTTTACGCCCACCACCGGACGAGCCGGACATAGCATCGGATTGAGGCTGCAAGC
GGTCAGGCGGGAAGATGCGACGTTACCGATCAAGTGTCTGGCTAGGATACCGGAGATTGG
ATATGACAATATGGCTACCATTCGGCCCAAGGTTAATTATGCACCGAGGACGGTGTCGAT
CACAATCACAAACCCGCTCGGCTCGCCGCCAATCAATATCAATCCTGAAGACGTGTCGCT
TTCATCACC

InterProScan

Gene3D	Ig-like_fold (IPR013783) - T[1-87] 1.1E-17 - T[88-199] 8.3E-8
ProSiteProfiles	Ig-like_dom (IPR007110) - T[1-79] 7.722
SUPERFAMILY	Ig-like_dom_sf (IPR036179) - T[3-84] 2.8E-13 - T[94-195] 1.25E-5
Pfam	CD80_C2-set (IPR013162) - T[7-69] 8.6E-6

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value