Aniseed - Transcript Card

Transcript Model

Transcript Id

Boschl.CG.Botznik2013.chrUn.g22481.01.t

Possible name(s)

IGFALS; LRIG2; LRRC15

Gene model

Boschl.CG.Botznik2013.chrUn.g22481

Location

chrUn [146,739,615 / 146,745,343]

Sequences

Amino acid sequence

Length: 393

>Boschl.CG.Botznik2013.chrUn.g22481.01.p
MICDRVLHVVIFLIATTSSTDTDRKCRRYEMTSSPVKKSAGGTDRVMVRCDGRKLTQLTS
AFLYETLVGPPTPVEVQADFEVGTGILHDQPRTTSAEPIYQLNLQNADLETIQDGVFRTV
PTLEVLNLRMNRVKEIGKRTFEGLLGLKDLNLGRNEIATVEPFSFSQQNELVYLTLAENH
LEELSYFTFRGLTRSQYLNLELNNITALRAGTFAAMPNLENLRLSLNRIRKLDGGMLAGL
YRLKHLYFTSNNLERILDGAFRSNKRLESLDLSGNQLTTINSATFDGLKSLRRLSLSNNK
IVHIDDVAFQKMPLLRELDLSHNEMKTLSRGMFMGLVNLNYFYAESNQLGDTGSLSKETD
SYQRLTEALSLLCRKRGMHFVNLRNNGLLTYLK

Nucleotide sequence

Length: 1,179

>Boschl.CG.Botznik2013.chrUn.g22481.01.t
AATGATCTGCGACAGAGTATTGCACGTGGTCATATTTTTGATTGCAACAACATCGTCAAC
GGATACAGATAGGAAATGTAGACGGTACGAAATGACTTCGTCTCCCGTCAAAAAGTCGGC
TGGTGGTACAGACAGAGTGATGGTTCGCTGCGACGGACGCAAATTGACGCAACTAACATC
TGCCTTCCTTTACGAGACATTGGTTGGTCCGCCAACGCCAGTGGAAGTGCAAGCAGATTT
TGAGGTCGGGACTGGTATATTACACGATCAGCCACGCACTACATCTGCCGAACCGATCTA
CCAGCTCAATTTACAAAACGCAGATTTGGAAACGATTCAAGATGGTGTCTTTCGTACAGT
ACCTACGTTAGAGGTGTTAAATCTAAGAATGAACAGAGTGAAGGAAATAGGGAAGCGCAC
ATTTGAAGGACTACTCGGTCTGAAAGACTTAAACCTGGGGCGAAATGAAATTGCAACAGT
CGAGCCATTCTCGTTTTCCCAGCAAAACGAGCTTGTCTATTTGACATTAGCGGAGAACCA
CTTAGAAGAATTGAGTTATTTCACTTTCAGAGGCCTCACCAGGTCACAATATCTGAATTT
GGAGTTGAACAACATCACCGCGTTGCGTGCCGGTACCTTTGCGGCTATGCCAAATTTGGA
AAACTTGCGTCTCTCGCTGAACAGGATTAGAAAATTGGACGGAGGAATGCTCGCAGGACT
TTATCGCTTGAAGCACCTGTATTTCACTTCGAATAACTTGGAGCGTATTTTGGACGGCGC
ATTTCGATCGAACAAAAGATTAGAATCCTTGGATTTATCGGGAAACCAGTTAACGACAAT
CAACTCAGCTACTTTCGATGGCCTGAAAAGTTTGCGTCGTCTATCACTCAGTAATAATAA
AATCGTTCACATTGATGACGTAGCCTTTCAAAAGATGCCTTTATTACGGGAGTTGGATCT
TTCTCATAATGAAATGAAAACATTATCAAGAGGTATGTTTATGGGTTTGGTGAACTTGAA
CTATTTTTATGCGGAATCGAATCAACTTGGCGATACAGGATCGCTCTCTAAAGAAACCGA
TTCATATCAGCGCTTGACTGAAGCATTGTCACTTCTCTGTAGAAAACGTGGGATGCATTT
TGTTAATCTTCGCAACAACGGCCTGTTGACATATTTGAA

InterProScan

Gene3D	LRR_dom_sf (IPR032675) - T[43-221] 1.2E-25 - T[222-387] 2.0E-36
Pfam	Leu-rich_rpt (IPR001611) - T[100-157] 2.1E-10 - T[197-253] 3.7E-12 - T[266-288] 0.08 - T[290-349] 2.4E-17
SMART	Leu-rich_rpt_typical-subtyp (IPR003591) - T[120-143] 13.0 - T[144-167] 8.0 - T[170-191] 140.0 - T[192-215] 23.0 - T[216-239] 0.68 - T[240-263] 0.36 - T[265-287] 1.6 - T[288-311] 0.0013 - T[312-335] 0.02
ProSiteProfiles	Leu-rich_rpt (IPR001611) - T[122-143] 5.902 - T[146-167] 6.942 - T[170-191] 6.064 - T[218-239] 6.772 - T[242-263] 5.972 - T[266-287] 7.458 - T[290-311] 8.698 - T[314-335] 6.503 - T[338-359] 5.125

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
ALS_HUMAN	32.016 %	112	7.32E-27
LRC15_HUMAN	33.613 %	108	7.94E-26
LRIG2_HUMAN	32.812 %	118	6.92E-29