- Transcript 'KH2012:KH.L3.1.v2.A....' >
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- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chrUn.g23377.01.t
Possible name(s)
NR1I3; NR2C2; VDR
Gene model
Location
chrUn [152,403,449 / 152,407,940]
Amino acid sequence
Length: 163
>Boschl.CG.Botznik2013.chrUn.g23377.01.p
MVWRISTGATKTISKVKEMSLDHEMGNREKAPSILRLIESASNDAKEKQPQEKICVVCGD
VATGTHFAAMTCEGCKGFFRRSMKKNVEFACAFDKHCAINKSNRKHCQACRLQKCLDMAD
LLFPILGEALILALSTAAEFSCDDSAVAISYLCVPQPGPITSP
Nucleotide sequence
Length: 492
>Boschl.CG.Botznik2013.chrUn.g23377.01.t
GATGGTCTGGAGAATTTCTACTGGAGCAACAAAAACAATTTCTAAAGTGAAAGAAATGTC
ATTGGATCATGAAATGGGCAATAGAGAAAAAGCCCCTTCCATTCTCCGGTTGATTGAATC
TGCGAGCAATGACGCGAAAGAAAAGCAGCCGCAGGAGAAGATTTGCGTCGTGTGCGGCGA
CGTGGCCACCGGGACCCATTTCGCGGCGATGACCTGCGAAGGGTGCAAAGGGTTCTTCCG
GCGGTCCATGAAAAAGAACGTGGAGTTTGCGTGCGCCTTCGACAAGCACTGCGCCATCAA
CAAGTCCAACCGCAAGCACTGCCAAGCCTGCCGGCTTCAGAAGTGTCTCGATATGGCCGA
TTTGCTCTTCCCGATCCTCGGCGAAGCTTTAATTTTAGCGCTGTCAACGGCCGCCGAATT
CTCTTGCGATGACTCGGCCGTCGCAATTAGCTATTTATGCGTTCCGCAGCCCGGCCCGAT
AACCTCTCCGTG
| Gene3D |
Znf_NHR/GATA (IPR013088) - T[44-120] 1.9E-26 |
| ProSiteProfiles |
Znf_hrmn_rcpt (IPR001628) - T[52-128] 17.035 |
| SMART |
Znf_hrmn_rcpt (IPR001628) - T[52-120] 4.9E-26 |
| Pfam |
Znf_hrmn_rcpt (IPR001628) - T[54-118] 1.3E-27 |
| PRINTS |
Znf_hrmn_rcpt (IPR001628) - T[55-71] 1.3E-15 - T[71-86] 1.3E-15 - T[104-112] 1.3E-15 - T[112-120] 1.3E-15 |
| ProSitePatterns |
Znf_hrmn_rcpt (IPR001628) - T[55-81] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| NR2C2_HUMAN | 49.425 % | 96.3 | 7.57E-24 |
| VDR_HUMAN | 65.672 % | 105 | 1.9E-27 |
| NR1I3_HUMAN | 48.485 % | 97.4 | 8.59E-25 |