- Clone 'M24F12' >
- Clone 'cien119424' >
- Transcript 'KH2012:KH.C2.693.v1....' >
- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chrUn.g25021.01.t
Possible name(s)
HMGB1; HMGB2; HMGB3
Gene model
Location
chrUn [163,721,391 / 163,722,186]
Amino acid sequence
Length: 202
>Boschl.CG.Botznik2013.chrUn.g25021.01.p
MGKKDPNKPRGKMTAYAFFVQTCRSEHKKAHPDEQVVFADFSRKCAERWREMSDKEKKIF
NDMAGRDKLRYDKEMATYVPTGGDGGGKRAVKRKKDPNAPKRPQSAFFLFCGDRRGEVKK
ANPTFAVGDVAKALGKMWSECPADEKAKYDVLAKAAKEKYMGQVAAYKDKQQRELSGAKK
PRKESSSSSSSGSDSGSDGDSD
Nucleotide sequence
Length: 609
>Boschl.CG.Botznik2013.chrUn.g25021.01.t
TGGGAAAGAAAGATCCTAATAAGCCGCGAGGAAAGATGACCGCGTACGCATTCTTCGTTC
AAACTTGCCGCTCCGAGCACAAAAAAGCGCACCCGGACGAGCAAGTTGTTTTTGCGGACT
TCTCACGAAAATGCGCTGAGAGATGGAGGGAAATGTCAGACAAAGAGAAAAAGATTTTTA
ACGACATGGCCGGCAGAGACAAGTTGAGGTATGACAAAGAAATGGCGACCTACGTGCCCA
CGGGAGGCGATGGTGGAGGAAAGCGAGCAGTCAAAAGAAAGAAGGACCCCAATGCCCCAA
AACGCCCACAGTCAGCATTCTTCTTATTCTGCGGTGACCGCAGAGGTGAGGTAAAAAAAG
CAAATCCCACATTCGCGGTTGGAGATGTCGCCAAGGCTCTCGGTAAAATGTGGTCGGAAT
GCCCTGCAGACGAAAAGGCCAAGTATGATGTGCTTGCAAAAGCTGCCAAGGAAAAGTACA
TGGGGGAAGTCGCTGCGTACAAAGATAAACAGCAACGGGAGCTGAGTGGTGCCAAAAAGC
CACGTAAGGAATCTTCATCATCGTCATCTTCTGGTAGTGACAGCGGCAGCGACGGCGACA
GTGACTGAG
| Gene3D |
HMG_box_dom_sf (IPR036910) - T[1-80] 2.4E-32 - T[83-184] 9.8E-27 |
| SUPERFAMILY |
HMG_box_dom_sf (IPR036910) - T[2-83] 3.14E-25 - T[92-172] 1.44E-25 |
| Pfam |
HMG_box_dom (IPR009071) - T[6-78] 2.3E-22 - T[100-168] 9.0E-22 |
| SMART |
HMG_box_dom (IPR009071) - T[8-80] 3.3E-21 - T[99-169] 6.3E-25 |
| ProSiteProfiles |
HMG_box_dom (IPR009071) - T[9-79] 15.941 - T[100-168] 17.403 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| HMGB1_HUMAN | 57.059 % | 189 | 3.7E-61 |
| HMGB2_HUMAN | 55.615 % | 188 | 9.42E-61 |
| HGB1A_HUMAN | 53.448 % | 177 | 2.18E-56 |