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- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chrUn.g25457.01.t
Possible name(s)
CDH12; CDH4; CDH6
Gene model
Location
chrUn [166,362,099 / 166,364,330]
Amino acid sequence
Length: 707
>Boschl.CG.Botznik2013.chrUn.g25457.01.p
MRFTAKVLSLLAICNCSRYHISGDFTNEFRCDELTGVIYQIAELDREIKSVYTITASAED
VNGNPTEDPELFKVHVKDINDNIPEFGKDSLTGSIAENHNKVDGFMKVVATDADIGFNGD
IVYSIELNSDVPESATGARFVIDKNTGDVRLSGELDYETIPVVKFTVIATDGGGRDDRLD
NKDRTAEVTVHVIDSNNHAPEFELTNKSLSELSKIDQPLYNIYATDKDEGVNRKVYFEIV
GGNTGGTFRIVSRPSNVSRSLGQLMLIKQLDFESGVTVYNLSVRALNTEAEESTVSKFAT
TKILKVTVIDENESPTFTNTPYSVKITEEQAPKRHEPIITIHAQDIDFGGNQTVTYSIDD
PAGWFHINSTTGEISVRSVVDREATWVSDGLYTLKVIATDDYNNGPRASASETVSIIIDD
INDNPPEWNSDGNEAYICEQPHNTTVKVIKSYDADSVKNGKKFHFRFNESVDTLNWGFEE
VNDDTQIVVAKFSDYGLTAKTAKVNLPFTITDSGTPAQTSTAALIVNICKCRDDTIVACV
DAPPNIGSNPLIIVVAVILVIVLIVLIVIFGVWYRPFAGHSKNYEADGISVTQTLQMHQE
ECGESDNTAFDMSILITALTGSSKEPTHKDDQTTKNADNGLPIRMDSDSNFGPHDSLFVF
SFEGTDSAAGSLSSIDTATTDGSDDYDYLREWGPKFNRLAEIYQDRL
Nucleotide sequence
Length: 2,124
>Boschl.CG.Botznik2013.chrUn.g25457.01.t
CATGCGCTTTACTGCGAAAGTATTGTCGCTGCTGGCTATCTGCAACTGCGCTAGATACCA
CATTTCCGGCGACTTTACGAACGAATTTAGGTGCGACGAACTCACAGGAGTAATCTATCA
AATCGCAGAGTTGGACAGAGAAATCAAATCTGTGTATACTATAACTGCGAGCGCTGAAGA
TGTTAACGGGAACCCAACAGAGGATCCAGAATTATTCAAAGTGCACGTAAAGGACATAAA
TGATAACATTCCTGAGTTTGGCAAAGATTCTTTAACCGGGAGTATAGCAGAGAATCATAA
TAAAGTGGATGGGTTCATGAAAGTCGTGGCTACTGATGCAGATATCGGTTTTAACGGAGA
TATAGTTTACTCCATAGAACTAAACAGCGATGTACCAGAATCTGCTACCGGGGCCAGATT
TGTCATCGACAAAAATACCGGGGACGTGAGGCTGTCTGGGGAGCTTGATTACGAAACAAT
TCCTGTTGTGAAATTTACTGTTATTGCCACTGATGGCGGGGGTCGAGATGACAGATTGGA
CAACAAAGATCGAACGGCAGAAGTTACTGTTCACGTTATCGATTCTAATAACCACGCGCC
GGAATTCGAACTTACAAATAAGTCTCTATCTGAGCTCTCGAAAATAGATCAACCGCTTTA
CAATATCTACGCCACTGACAAAGATGAAGGTGTTAACAGGAAAGTCTATTTTGAAATAGT
CGGCGGAAACACAGGCGGGACTTTTCGTATCGTTTCCAGGCCTTCTAACGTCAGTAGAAG
TCTGGGACAACTTATGCTCATCAAGCAGTTAGACTTCGAGAGCGGCGTTACCGTTTATAA
TTTGTCAGTGAGAGCCTTGAATACAGAAGCAGAAGAATCAACCGTTTCAAAATTCGCGAC
AACCAAGATTTTGAAAGTCACTGTAATCGATGAAAACGAATCGCCAACGTTCACGAATAC
TCCATACTCCGTAAAGATCACAGAAGAACAAGCACCAAAACGTCATGAACCCATTATTAC
AATCCACGCTCAGGACATAGACTTTGGCGGTAATCAGACTGTAACGTACTCAATAGACGA
TCCTGCTGGATGGTTTCACATAAATTCGACCACTGGAGAAATCAGTGTGCGCAGTGTAGT
CGATAGAGAAGCTACATGGGTTAGTGACGGTTTGTATACCCTCAAAGTCATTGCAACCGA
CGACTATAACAATGGACCGCGCGCTAGTGCCAGTGAGACTGTTAGCATAATCATAGATGA
TATCAATGATAATCCACCGGAGTGGAATTCGGATGGCAATGAGGCTTATATTTGCGAACA
ACCACACAACACTACTGTAAAGGTTATAAAATCTTACGATGCAGATTCAGTTAAAAACGG
AAAGAAATTTCATTTCCGATTCAACGAGTCGGTCGATACGTTAAACTGGGGGTTTGAAGA
AGTCAATGATGATACACAGATAGTTGTTGCTAAATTTTCGGACTACGGTTTGACAGCAAA
AACTGCAAAAGTTAATCTTCCATTTACAATAACAGATTCGGGCACTCCAGCACAGACATC
TACGGCCGCGCTAATTGTGAATATATGCAAGTGTCGAGATGATACTATCGTAGCCTGTGT
GGACGCCCCGCCTAACATAGGATCAAATCCGTTGATCATTGTAGTCGCAGTGATTTTGGT
GATCGTTTTGATAGTTCTAATCGTGATATTTGGCGTGTGGTATCGACCATTCGCGGGACA
TAGCAAGAACTATGAAGCAGACGGCATCAGCGTCACGCAGACGCTTCAGATGCACCAAGA
AGAGTGTGGAGAATCGGATAATACTGCGTTTGACATGTCGATTCTTATAACAGCATTGAC
TGGTAGTTCAAAAGAACCTACTCATAAAGATGATCAAACAACAAAGAATGCTGACAACGG
ATTGCCGATCAGAATGGATAGCGACTCAAATTTTGGACCGCATGATTCGCTCTTTGTTTT
CTCGTTCGAAGGAACTGATTCTGCAGCTGGTTCGTTGTCGTCTATTGACACCGCAACGAC
AGACGGGTCTGACGACTATGATTATCTCAGAGAATGGGGTCCGAAGTTTAATCGTCTAGC
TGAGATATACCAGGACCGTTTATA
| SMART |
Cadherin (IPR002126) - T[3-84] 1.4E-8 - T[108-200] 1.7E-21 - T[222-316] 3.1E-9 - T[341-426] 7.2E-20 - T[449-536] 1.9 |
| SUPERFAMILY |
Cadherin-like (IPR015919) - T[18-86] 1.43E-11 - T[74-205] 3.57E-22 - T[196-310] 1.17E-11 - T[313-428] 1.23E-21 - T[421-529] 4.57E-11 |
| PRINTS |
Cadherin (IPR002126) - T[27-46] 7.9E-18 - T[86-115] 7.9E-18 - T[162-174] 7.9E-18 - T[181-200] 7.9E-18 - T[315-328] 7.9E-18 - T[410-427] 7.9E-18 |
| ProSitePatterns |
Cadherin_CS (IPR020894) - T[74-84] . - T[416-426] . |
| Pfam |
Cadherin (IPR002126) - T[93-192] 1.0E-12 - T[208-292] 2.1E-10 - T[322-417] 1.7E-13 |
| Pfam |
Cadherin_cytoplasmic-dom (IPR000233) - T[598-705] 3.4E-23 |
| Gene3D |
Catenin_binding_dom_sf (IPR027397) - T[644-706] 2.1E-21 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CADH4_HUMAN | 29.614 % | 246 | 2.29E-70 |
| CAD12_HUMAN | 29.372 % | 234 | 1.05E-66 |
| CADH6_HUMAN | 28.375 % | 226 | 7.85E-64 |