Aniseed - Transcript Card

Transcript Model

Transcript Id

Boschl.CG.Botznik2013.chrUn.g28972.01.t

Possible name(s)

EPHA4; EPHB2; EPHB3

Gene model

Boschl.CG.Botznik2013.chrUn.g28972

Location

chrUn [190,023,096 / 190,030,292]

Sequences

Amino acid sequence

Length: 439

>Boschl.CG.Botznik2013.chrUn.g28972.01.p
MRVQGWTTDVDSERNLHDQTILPYQPFSTCHWEELSGLDENGQPIRFHQICQIDSGGEQN
NWIRSPFIESDYARRAYIDVTYSMVKCSNCRETFTLYYYQSPDDVASTTFPPWREGPYEK
IDTVAAGNPFDANSALSTKGINIKTFSIGPLRRKGFYIAAQDEGACMSLIAVRVYYNYCP
ETTHGLAYYPRTLPGADIASLIPIDGKCVSHAVYKNGETPKYRCNSGGEWQVPTGTCQCR
SGYEPNGLLTACEACGQGHYKDIDANVECTACPANSVSHTPGATFCSCKEGFFRVKGDSM
DQGCIDPPSAPLNVTFEEIEMPERGVEVRWLMPQTGSNRGLHFSVDCFKCANDYNTCQPC
PMSVKLSPSKDQLKGTSVRLSGLEEATAYKLKIFSRNIVSADTPLSSLIQFSTNSKVPST
PRNVRITSNGGGSLSVRWD

Nucleotide sequence

Length: 1,317

>Boschl.CG.Botznik2013.chrUn.g28972.01.t
TGCGTGTACAAGGGTGGACGACGGACGTGGACAGTGAACGCAATTTACATGATCAGACCA
TATTGCCGTACCAGCCTTTCAGCACGTGTCACGGGGAAGAACTGAGCGGCCTCGACGAAA
ACGGACAACCCATTCGTTTTCATCAAATCTGTCAAATCGACAGTGGCGGAGAGCAAAATA
ACTGGATTCGTTCGCCGTTTATTGAATCCGAGTACGCCCGGCGTGCGTATATCGACGTGA
CGTACTCCATGGTTAAATGCAGCAATTGTCGGGAGACTTTTACCTTGTACTACTACCAGT
CCCCTGATGACGTCGCATCAACAACATTCCCACCGTGGCGGGAAGGTCCCTACGAGAAAA
TTGACACGGTCGCAGCCGGTAATCCATTTGACGCTAATTCAGCGCTAAGCACGAAAGGGA
TAAATATCAAAACGTTCAGCATCGGACCGCTTCGGAGGAAAGGGTTTTACATCGCTGCTC
AAGATGAGGGAGCGTGTATGTCTCTGATTGCCGTGCGCGTATATTACAACTATTGCCCGG
AGACGACGCACGGGTTAGCTTACTATCCGCGAACGTTACCGGGAGCTGACATCGCGTCAC
TGATACCGATTGATGGGAAATGTGTATCGCACGCGGTGTACAAAAATGGCGAAAGTCCGA
AATACCGTTGCAACAGCGGAGGAGAATGGCAAGTACCTACGGGAACGTGTCAATGTCGAT
CTGGTTATGAACCGAACGGACTCTTAACAGCTTGCGAAGGTTGTGGTCAAGGTCATTACA
AAGATATCGACGCCAACGTCGAATGCACAGCCTGTCCGGCGAACAGTGTATCACACACGC
CAGGGGCCACGTTTTGCTCTTGTAAAGAAGGATTTTTCAGGGTGAAAGGCGACTCTATGG
ACCAGGGGTGCATCGGCCCTCCTTCTGCGCCGTTGAATGTGACATTCGAAGAAATTGAAA
TGCCAGAGCGAGGCGTTGAAGTCAGATGGTTAATGCCGCAAACTGGAAGTAATAGAGGCC
TTCATTTCAGGGTCGATTGCTTCAAATGCGCCAACGACTATAATACCTGCCAGCCATGTC
CGATGTCAGTGAAGCTCTCCCCTAGCAAAGATCAACTGAAAGGCACTTCGGTTCGACTGT
CCGGTCTGGAAGAAGCGACTGCTTACAAGTTAAAGGTATTTTCTCGCAACATCGTGAGCG
CTGACACTCCGTTGTCCAGTTTGATCCAATTTTCGACAAACAGTAAAGGGCCTTCAACAC
CGAGAAATGTGAGAATTACTTCAAACGGAGGCGGCTCCCTTTCCGTCAGATGGGACT

InterProScan

ProSiteProfiles	Ephrin_rcpt_lig-bd_dom (IPR001090) - T[1-184] 48.797
Gene3D	Galactose-bd-like_sf (IPR008979) - T[10-179] 1.4E-50
SMART	Ephrin_rcpt_lig-bd_dom (IPR001090) - T[13-179] 3.1E-51
Pfam	Ephrin_rcpt_lig-bd_dom (IPR001090) - T[25-179] 1.5E-47
SUPERFAMILY	Galactose-bd-like_sf (IPR008979) - T[26-177] 3.1E-49
SUPERFAMILY	Growth_fac_rcpt_cys_sf (IPR009030) - T[205-304] 3.14E-10 - T[347-362] 3.14E-10
SMART	Tyr-kin_ephrin_A/B_rcpt-like (IPR011641) - T[242-286] 3.9E-7
Pfam	Tyr-kin_ephrin_A/B_rcpt-like (IPR011641) - T[246-284] 2.3E-6
SUPERFAMILY	FN3_sf (IPR036116) - T[306-439] 5.45E-14
Gene3D	Ig-like_fold (IPR013783) - T[308-413] 4.1E-13
CDD	FN3_dom (IPR003961) - T[308-413] 9.57406E-5
ProSiteProfiles	FN3_dom (IPR003961) - T[310-416] 11.219 - T[420-439] 7.795

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
EPHA4_HUMAN	37.143 %	275	2.71E-83
EPHB3_HUMAN	37.406 %	265	1.9E-79
EPHB2_HUMAN	35.476 %	261	3.72E-78