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- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chrUn.g29289.01.t
Possible name(s)
FMR1; FXR1; FXR2
Gene model
Location
chrUn [192,383,539 / 192,385,946]
Amino acid sequence
Length: 498
>Boschl.CG.Botznik2013.chrUn.g29289.01.p
MENRTVEVRGSNGAYYKAFLCDVLPTGILVTFENNWQPERIIPFKEIRLAPVADDADFTE
GQEVEVHSRANDNEPCGWWYSRIKMSKGEFFVIEYQSCDPKYTEIVTKDRLRPMNKNPSL
SPDSLRKVALDVAEDLQNYCLKYADLHREFEKSVGAILVRYNAKTKQLDVLVSSESAQKR
ASIVSELHFRSLRTKLQMLQKVEEASKQLEMTQQRAESCIEKFSVDEDLMGLAIGTGGVN
IIAARKIPGVVDIILDEETHTFTVYGETKEAVLKAREILEFCEEEVVIPRAYVGKVIGKK
GTTIQEMIDKSGVVRVRVVGDDENREKELEPGMVPFRFVGIRECIKNAKALLDYHVANLR
DLDQLRMEQLTINQRIRQLGAGSAYTLHDGETNGEGNHRRRYVPNRGRGGRRQNGSDRDS
NLNTNSEVSISDTGSETGNESVTDARGNIKSKEVVNNGFPNQNSSKKPPRKDAPNPNRNR
FELLNGAGGEDVAEGVST
Nucleotide sequence
Length: 1,497
>Boschl.CG.Botznik2013.chrUn.g29289.01.t
TGGAAAATAGAACCGTGGAAGTCCGTGGCTCTAATGGTGCTTACTACAAAGCTTTCCTTT
GTGATGTTTTACCTACGGGAATTCTTGTGACTTTCGAAAACAATTGGCAACCGGAAAGAA
TCATCCCGTTCAAAGAAATTCGATTAGCACCGGTCGCGGACGATGCCGATTTTACGGAAG
GACAAGAGGTCGAAGTTCACTCAAGAGCAAATGACAATGAACCGTGCGGATGGTGGTATT
CTCGTATTAAAATGAGCAAAGGAGAATTTTTTGTCATCGAGTATCAATCCTGCGACCCGA
AATACACGGAAATAGTCACAAAGGACCGACTCCGTCCCATGAATAAGAACCCATCTCTGT
CTCCAGATTCATTGAGAAAAGTTGCCCTCGATGTCGCCGAAGATCTTCAAAATTACTGCT
TGAAGTATGCTGACTTGCATAGGGAATTTGAAAAGAGCGTTGGCGCTATACTGGTTCGCT
ACAACGCAAAAACGAAGCAATTGGATGTCCTCGTGTCTAGCGAATCGGCGCAAAAGCGGG
CTTCCATCGTGTCCGAATTGCATTTTCGCAGTTTACGAACCAAGTTACAGATGCTGCAAA
AAGTCGAGGAGGCGTCCAAACAGTTGGAGATGACCCAACAACGCGCAGAGTCATGCATAG
AAAAGTTTTCAGTTGATGAAGATTTAATGGGTCTTGCTATCGGTACGGGGGGAGTGAATA
TTATAGCGGCCCGTAAAATTCCAGGTGTAGTCGATATCATCTTGGACGAGGAGACGCATA
CGTTTACAGTGTACGGAGAAACGAAAGAAGCTGTGCTGAAAGCTCGCGAAATTCTGGAAT
TTTGTGAAGAAGAAGTGGTGATTCCAAGAGCTTACGTTGGGAAGGTGATCGGAAAGAAAG
GGACCACTATTCAAGAAATGATCGACAAGTCCGGGGTTGTTAGAGTTCGTGTAGTAGGAG
ACGATGAAAACAGAGAGAAAGAACTCGAGCCTGGCATGGTGCCGTTTCGCTTTGTTGGAA
TACGCGAGTGTATTAAAAACGCGAAAGCATTGTTGGACTATCACGTCGCGAATCTCCGCG
ATCTCGACCAGCTCCGTATGGAGCAGTTGACTATCAATCAACGCATACGGCAGTTAGGTG
CGGGTTCAGCGTACACGCTGCATGACGGGGAGACTAACGGCGAGGGTAATCACAGGCGAA
GGTACGTGCCGAACCGCGGACGCGGCGGTCGTAGACAAAATGGAAGCGACCGCGACAGCA
ATTTGAATACAAACTCGGAAGTTTCGATATCGGATACGGGCTCGGAGACGGGTAATGAAT
CCGTTACGGACGCGAGAGGCAACATCAAGTCGAAAGAAGTGGTTAACAATGGATTTCCCA
AGCAAAATTCTTCAAAAAAACCTCCGAGAAAAGACGCTCCGAATCCCAACCGTAATCGTT
TTGAACTTTTAAATGGTGCCGGTGGTGAAGATGTGGCAGAAGGAGTAAGTACCTAAT
| ProSiteProfiles |
Agenet-like_dom (IPR008395) - T[4-50] 11.846 - T[62-114] 22.685 |
| Pfam |
Agenet-like_dom (IPR008395) - T[61-115] 5.7E-6 |
| SMART |
KH_dom (IPR004087) - T[217-283] 0.0016 - T[284-357] 2.4E-4 |
| Gene3D |
KH_dom_type_1_sf (IPR036612) - T[218-280] 2.9E-26 - T[281-360] 3.2E-23 |
| SUPERFAMILY |
KH_dom_type_1_sf (IPR036612) - T[219-285] 1.64E-10 - T[284-368] 8.51E-10 |
| Pfam |
KH_dom_type_1 (IPR004088) - T[284-352] 1.2E-10 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| FXR1_HUMAN | 54.211 % | 426 | 1.08E-143 |
| FXR2_HUMAN | 54.497 % | 419 | 1.92E-140 |
| FMR1_HUMAN | 53.869 % | 359 | 8.71E-118 |