- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chrUn.g29854.01.t
Possible name(s)
LNX2; MPDZ; PATJ
Gene model
Location
chrUn [195,869,185 / 195,874,966]
Amino acid sequence
Length: 1,926
>Boschl.CG.Botznik2013.chrUn.g29854.01.p
MPTETDFERCADILARLQDGVLQKKSLSKHSAAIQQLLNLLQNPGFRETAKLQNSMKQLK
KEVNNPGFNVSKLDFSPEVGGLTLGGKKIEVETEPDYDSDSSFDDSEDDENEMNEFVERA
AQGRETEKISLVKSENEGLGFSVVGLRSEHRGDLGIFVQDIKPAGVADRDGRLKESDQIL
VINNQPLAPNISHQQAIGILQRVSGIVELTVARGGIPQEQNANGSPQLSRSSSVASTMSQ
ASGNLPDTEWGEIETIELINDGKGLGFGIVGGKATGGVVVKTIVPGGAAHGDGRLRSGDH
ILRIGDTDLRNMGSEQAAVVLRQCGSVVRLVVARNSVEDDTQAEDDNHSEHDNDYETPHS
RSSSVSVSLSEEESSVGPPITSNLEYHNVELVKDSKGLGITIAGFMQEDGTDKGAMSGIY
VKSVSPGSAADADGRIHPGDVIVAVDGRRLDTPNISSEEAVEVLRKTGTVVRLTVGRPKE
DNHRDDSSADSNSLPDINAPWGEIEQDHGDVLNSSEIDQIRTEWEAIVGPEYEVVIAQIK
KFSITSGLGINLEGVIDEGNQPHHYIRSLLPEGPVARSKMLLPGDELLEVNRTRILGLRQ
VVTVIKDLPLNVCIVCARPHNAPVIPKSKRDSVILEEREGEYFERRMNAEENALSYHQEK
EDSYSSSSSDSAPEENTMKSSSHSLSMNVMAPDPDSAWEEEITFIDLEKGDESLGFSILD
FQDPINPQRTAILVRSIVPDGVAHRDGRLEPGDKVMFVNDVPLKNHTLETVVNVLKSVAP
GLVRIGVAKPKPEFKVLQEKEIRPETKEDGKSQLFVEPLPPPPPVPSSSSDEEDYEEEMR
RQQAVERENEMTRQAQLVEFKREEELRRQQAIEHEKEQQRQAQLAELKRAEELQRQQALE
REKEMKRQAQLDEFKRTEELQKQRADREEEMKRQAQSAEFEWAEELQKQQALEYKKELQR
QAQLAEFKKVEERPKPSVRSPNERNPPTTFTSRDSQSSANASHRRSSSITTQSSEDRTME
VKQIQVSGMTAIAITSSLTSPISPAESQKSFEPPISPLKSPEPDVFPPKAAPRPRYTAPS
WQVAEDNKRLPISAELYEKKVQISKGREGLGITVSPDRDGDGLVVGSINANGAVHRARRP
KLGDVIRRINNDSCVGLGAMQARALITNHSRFSSDVAIVYVPKNFVQAYKDGVPPPATNS
PASSESETEQPKNVNVLRSKFEEPARNESSDMKDKYKNVNGVVHIVDLQKGSGGLGLGLA
GNKDKSLRGIYVIAVDPNGAAAKDGRIVVGDEILEINNVSVTGPNNHQRASAVIKSAESS
LRIVLLRSKAANSSRLSSGSSNSISEDRSSSKAGSRDISDRKSRRTSDGTQKPRSSRSSS
RGSAGSESGPAQPKTKTIKLVKDFQGLGFAISETGDGIVVQSIAADGTADRDGRLKRGDY
IVAVDDKSLDGMSYESAVKVLKESRGTVKLTVAADPPDPDQTSSSQTDPAVCPIVSGRET
TIEISKGHSGLGLSIVGGADSLLGSVFVHAVYEEGAAARDGRIWPGDRILQVNEHDLRSA
THDDAIEVLRNTPGRVVLTVLRNENNDPQKLDSFTYDVFLDKKPDRGLGLSILGKSSGGG
VFVSDVVHGGVAANEGSITPGDQLLSVNDVDVTQATQADVATMLKTASGTVHFRFQRSLH
APIPAARVFSESGNAYDEEISDQHSHDGERHVEIRKGPSQPLGISISGGVGSPLGNVPVF
VAMVSSSGAASGKLEKGDKILSINGESTHDRTHEDVANMLKASVSHRVVRLTVKQGGQDM
QALAEYLTTQPQEKKSTPRPKSESFVPATTSDTAYESSEAVEIVLNRGSDGLGFSIVGGI
GSVHGDLPIFVKSIFDAGAATVDGRLKRGDRIITVNGQLVDGCSHEEAVNVLKLAKGRVV
LKVIPS
Nucleotide sequence
Length: 5,781
>Boschl.CG.Botznik2013.chrUn.g29854.01.t
GATGCCTACTGAAACCGATTTTGAGAGATGCGCCGACATTCTCGCCCGTCTTCAAGATGG
CGTCCTGCAGAAGAAGTCGCTATCGAAACACTCGGCTGCGATACAGCAGCTGCTCAATCT
ACTGCAGAATCCAGGGTTTCGAGAAACGGCCAAGTTACAAAATTCGATGAAACAGCTCAA
GAAGGAAGTCAACAATCCGGGTTTTAATGTTAGCAAACTGGATTTTTCTCCCGAAGTTGG
CGGGCTGACTCTCGGTGGAAAAAAAATTGAAGTTGAAACCGAACCGGACTATGATAGCGA
CAGCAGCTTCGATGATAGCGAAGACGATGAAAACGAAATGAACGAATTTGTGGAGCGAGC
CGCACAAGGAAGAGAGACTGAAAAAATCAGTCTTGTCAAGTCTGAAAATGAAGGTCTTGG
ATTTAGTGTCGTCGGCCTTAGATCGGAACACAGAGGCGATCTCGGAATATTCGTGCAAGA
TATTAAACCCGCCGGAGTTGCCGACCGCGATGGTAGATTAAAAGAAAGCGACCAAATCCT
GGTGATCAACAATCAGCCTCTGGCGCCAAACATATCGCATCAGCAAGCTATTGGTATTTT
GCAGCGCGTTAGCGGAATCGTCGAGCTGACAGTCGCCAGGGGTGGAATTCCACAGGAGCA
AAACGCTAACGGCAGCCCTCAACTATCCAGGTCGTCGTCAGTAGCTAGTACGATGTCGCA
GGCTTCCGGAAACCTTCCCGATACGGAATGGGGGGAAATAGAAACTATCGAGTTAATCAA
CGATGGAAAAGGATTGGGTTTTGGGATTGTTGGGGGGAAAGCAACCGGGGGTGTAGTTGT
GAAGACAATCGTACCGGGCGGGGCCGCACACGGAGATGGCCGGCTACGATCTGGGGATCA
CATACTCAGAATCGGAGACACAGACCTTCGCAATATGGGATCCGAACAGGCCGCCGTAGT
GCTGCGCCAATGCGGGAGTGTTGTCAGACTGGTCGTTGCCCGGAATTCGGTAGAAGATGA
CACGCAGGCGGAAGATGACAATCACAGTGAACACGACAACGATTATGAGACGCCTCATTC
GCGATCTTCGTCGGTCAGTGTGAGTTTATCCGAAGAGGAGTCTAGCGTCGGTCCGCCTAT
CACGAGCAATCTCGAGTATCACAATGTGGAGCTCGTGAAAGATTCGAAAGGGCTTGGCAT
CACGATTGCGGGATTCATGCAAGAAGACGGGACCGACAAAGGGGCTATGTCTGGAATTTA
TGTGAAGAGTGTTTCGCCTGGATCCGCGGCCGATGCCGATGGCAGAATTCACCCAGGTGA
CGTCATTGTAGCTGTGGACGGACGTCGGTTGGATACGCCTAATATATCGAGCGAAGAGGC
CGTCGAAGTTTTGCGTAAAACTGGTACTGTAGTCAGATTAACTGTCGGTCGTCCGAAAGA
AGATAACCACCGTGATGACTCCAGTGCTGACAGCAACAGTCTTCCCGATATCAACGCTCC
TTGGGGCGAAATCGAGCAGGACCACGGGGATGTCTTGAATTCGTCGGAAATCGATCAAAT
ACGGACGGAATGGGAGGCTATCGTCGGTCCTGAATACGAGGTCGTGATTGCGCAAATCAA
GAAATTCAGCATCACGAGCGGGCTCGGGATTAATCTCGAAGGAGTGATCGACGAAGGTAA
TCAGCCTCACCATTACATCAGATCACTGCTACCTGAAGGCCCAGTGGCGCGATCGAAAAT
GCTTCTCCCCGGCGATGAATTGTTGGAAGTCAATCGAACAAGAATACTGGGTTTGCGTCA
GGTGGTGACGGTGATCAAAGACCTCCCGTTGAACGTCTGTATTGTGTGCGCCAGGCCGCA
TAACGCGCCGGTCATTCCAAAGTCGAAACGCGACTCTGTTATCTTGGAGGAACGCGAAGG
GGAGTATTTCGAGAGAAGGATGAACGCAGAAGAGAACGCTTTGTCTTATCATCAAGAAAA
AGAGGATTCCTACTCGAGTAGTAGTTCCGATTCGGCGCCGGAAGAAAACACTATGAAATC
GTCTTCGCATTCTTTGAGCATGAATGTTATGGCGCCTGATCCCGACAGCGCTTGGGAAGA
AGAAATAACCTTCATTGACCTCGAAAAGGGCGACGAAAGTCTCGGCTTTAGCATTCTCGA
CTTCCAAGATCCGATCAATCCGCAACGCACCGCGATACTGGTTCGCTCGATTGTGCCAGA
TGGCGTCGCGCACAGAGACGGCCGGCTGGAGCCTGGCGACAAGGTCATGTTCGTAAATGA
TGTCCCGCTGAAAAATCACACGCTGGAAACTGTTGTTAATGTGTTGAAGAGTGTTGCACC
TGGATTAGTAAGGATTGGTGTGGCAAAACCGAAGCCGGAATTCAAAGTGTTGCAAGAGAA
GGAAATACGACCGGAAACCAAAGAAGATGGAAAGAGTCAGTTGTTTGTAGAACCCTTACC
TCCACCTCCACCAGTGCCTAGCTCTTCTTCGGACGAAGAAGACTATGAAGAAGAGATGCG
TAGACAGCAAGCTGTCGAGCGCGAAAACGAAATGACACGCCAAGCGCAACTGGTCGAGTT
TAAAAGAGAGGAAGAATTGCGACGGCAACAGGCTATTGAGCATGAAAAAGAACAACAGCG
TCAAGCGCAATTGGCGGAATTGAAACGAGCGGAAGAATTGCAAAGGCAGCAGGCTCTGGA
ACGCGAAAAGGAAATGAAGCGTCAGGCGCAGTTGGACGAATTCAAAAGGACGGAAGAACT
GCAGAAGCAACGGGCTGATCGCGAGGAGGAAATGAAACGGCAAGCTCAATCGGCCGAATT
TGAATGGGCGGAGGAATTGCAGAAACAACAGGCGCTCGAGTACAAAAAGGAACTGCAGCG
TCAAGCGCAATTGGCCGAATTCAAGAAAGTGGAAGAGCGACCGAAGCCGTCGGTTCGGTC
GCCGAACGAACGCAATCCACCTACGACATTCACCTCGAGAGACAGCCAATCTTCAGCTAA
CGCGTCGCACAGGCGATCGTCCAGCATCACCACGCAGTCTTCTGAAGATCGCACGATGGA
GGTGAAACAGATACAGGTGTCGGGAATGACGGCGATTGCCATTACGAGTAGTTTGACGTC
GCCTATTAGCCCGGCGGAATCTCAGAAATCGTTCGAACCGCCGATCTCGCCACTGAAATC
ACCGGAGCCGGATGTTTTTCCTCCTAAAGCCGCTCCTAGGCCGCGATACACCGCACCGTC
ATGGCAGGTGGCCGAGGATAACAAGAGACTGCCTATATCGGCCGAACTGTACGAAAAGAA
GGTGCAAATAAGTAAAGGCCGCGAAGGACTGGGTATAACTGTCAGCCCTGATCGTGACGG
TGACGGGCTTGTCGTGGGATCGATAAACGCCAACGGGGCTGTTCATAGAGCAAGGAGGCC
GAAATTAGGCGATGTCATTAGGAGGATAAATAACGACTCCTGCGTCGGTTTGGGAGCGAT
GCAGGCGCGAGCGCTGATCACCAATCATTCCAGGTTCAGCTCCGACGTGGCGATCGTGTA
CGTTCCGAAAAACTTTGTGCAGGCTTACAAAGACGGAGTTCCGCCTCCCGCCACGAATTC
GCCTGCATCGTCGGAATCTGAGACGGAACAGCCTAAAAACGTAAATGTTTTACGATCGAA
GTTTGAAGAACCGGCTCGGAACGAAAGTTCCGACATGAAAGATAAATACAAGAACGTCAA
CGGAGTTGTGCACATTGTTGACTTGCAGAAAGGATCGGGCGGTTTGGGTTTGGGCCTCGC
TGGTAACAAAGATAAATCTCTTCGGGGAATATACGTGATAGCTGTCGATCCTAACGGGGC
TGCGGCCAAAGACGGCAGGATCGTTGTCGGCGATGAGATACTCGAGATAAACAACGTATC
AGTGACGGGACCTAATAACCACCAACGGGCTTCAGCCGTTATCAAAAGCGCTGAGTCAAG
TCTTCGAATCGTGCTGTTGAGAAGCAAAGCCGCGAATTCGTCGAGGCTTTCGTCAGGCTC
TTCAAATTCGATATCCGAAGATCGCTCCAGTTCGAAAGCAGGGTCTCGCGATATATCAGA
TCGCAAAAGTCGCCGTACTTCGGACGGGACGCAAAAACCCAGGTCTTCCAGAAGCAGCAG
CCGGGGCTCGGCCGGTTCCGAGTCGGGTCCCGCGCAACCGAAAACGAAAACCATCAAGCT
GGTCAAGGACTTTCAAGGTCTCGGATTCGCGATTTCGGAAACGGGCGACGGCATCGTGGT
GCAGTCGATAGCCGCTGATGGTACCGCGGACCGGGACGGCAGGCTGAAGCGTGGCGACTA
CATCGTTGCCGTGGACGACAAGTCGCTGGATGGGATGTCGTACGAAAGCGCGGTGAAAGT
GTTGAAGGAATCTCGTGGAACGGTGAAGCTGACCGTTGCCGCCGACCCGCCTGATCCGGA
TCAAACCAGCTCGAGCCAGACGGATCCTGCCGTGTGTCCGATCGTCAGCGGCCGTGAAAC
TACAATAGAGATCAGCAAAGGACATTCGGGGTTAGGACTCAGTATAGTGGGCGGTGCGGA
CTCGCTTTTGGGATCGGTATTCGTCCATGCCGTGTACGAGGAAGGTGCAGCTGCCAGGGA
CGGTCGAATATGGCCCGGAGACAGAATCCTGCAAGTCAATGAGCATGATTTGAGGTCAGC
GACTCACGATGACGCAATCGAAGTCTTGCGGAACACTCCCGGCAGGGTAGTGCTTACGGT
TTTGCGGAACGAAAACAACGACCCGCAGAAATTGGACTCGTTCACCTATGATGTGTTCTT
GGACAAAAAACCGGACAGGGGTCTAGGACTGAGCATACTCGGAAAATCGTCCGGGGGCGG
AGTGTTTGTCAGCGACGTAGTCCACGGTGGCGTGGCGGCTAACGAAGGTTCGATCACGCC
AGGAGATCAACTCTTGTCTGTGAACGATGTAGACGTGACGCAAGCCACTCAGGCTGACGT
AGCAACCATGCTGAAAACGGCCTCCGGGACAGTACACTTTCGATTTCAAAGATCTTTACA
TGCGCCAATTCCGGCTGCCCGAGTGTTTTCAGAGAGCGGCAATGCGTATGACGAGGAAAT
ATCAGATCAGCATTCTCATGACGGCGAACGCCACGTGGAAATACGCAAGGGCCCGTCTCA
ACCTCTCGGTATCAGTATATCAGGAGGCGTTGGGTCGCCTCTTGGTAATGTTCCGGTCTT
TGTGGCTATGGTGTCTTCGAGCGGAGCAGCGTCTGGAAAACTAGAGAAAGGCGACAAGAT
ACTAAGCATCAACGGAGAGTCTACACACGACAGGACGCACGAGGACGTGGCAAACATGCT
GAAAGCGTCCGTGTCACATCGTGTGGTCCGGTTGACTGTAAAACAAGGCGGGCAGGACAT
GCAGGCTTTGGCCGAGTATCTCACTACGCAGCCTCAAGAAAAGAAATCGACGCCCAGGCC
TAAATCCGAAAGCTTCGTGCCGGCTACTACTTCCGACACTGCTTACGAATCGTCTGAAGC
GGTCGAGATAGTACTGAACAGAGGCAGTGACGGGCTGGGATTCAGCATCGTGGGAGGAAT
CGGGTCAGTGCATGGGGATCTGCCAATTTTTGTCAAGTCTATTTTCGACGCCGGTGCTGC
TACCGTCGACGGCAGACTGAAAAGAGGGGATCGAATCATAACCGTGAATGGACAACTGGT
CGACGGATGCAGTCATGAGGAGGCGGTTAACGTGTTGAAACTCGCTAAAGGCCGAGTTGT
TCTCAAAGTCATTCCGTCGTG
| SUPERFAMILY |
PDZ_sf (IPR036034) - T[104-215] 4.07E-22 - T[229-336] 1.97E-24 - T[368-480] 6.84E-23 - T[523-625] 1.84E-13 - T[680-795] 7.06E-22 - T[1090-1184] 1.97E-11 - T[1241-1328] 2.5E-21 - T[1392-1479] 9.6E-24 - T[1477-1586] 1.12E-27 - T[1592-1682] 5.65E-20 - T[1700-1800] 1.45E-21 - T[1816-1925] 2.23E-27 |
| ProSiteProfiles |
PDZ (IPR001478) - T[128-215] 20.345 - T[255-336] 20.425 - T[388-479] 22.355 - T[533-620] 12.245 - T[704-777] 16.426 - T[1100-1168] 10.878 - T[1245-1329] 20.023 - T[1397-1476] 19.963 - T[1501-1584] 21.953 - T[1597-1679] 18.616 - T[1711-1795] 17.39 - T[1842-1926] 20.868 |
| Pfam |
PDZ (IPR001478) - T[129-211] 1.2E-12 - T[261-332] 6.7E-15 - T[394-475] 1.5E-15 - T[544-599] 1.5E-6 - T[705-778] 9.4E-12 - T[1101-1169] 1.2E-6 - T[1247-1325] 2.7E-13 - T[1404-1472] 1.7E-13 - T[1502-1580] 5.1E-15 - T[1601-1673] 7.2E-14 - T[1713-1793] 7.0E-14 - T[1843-1923] 1.3E-14 |
| SMART |
PDZ (IPR001478) - T[137-215] 1.0E-18 - T[263-336] 8.4E-20 - T[396-479] 1.6E-22 - T[546-620] 3.6E-7 - T[712-791] 5.3E-16 - T[1108-1184] 6.9E-5 - T[1253-1329] 1.9E-17 - T[1405-1476] 4.8E-20 - T[1509-1584] 6.4E-23 - T[1606-1679] 9.2E-18 - T[1720-1797] 5.9E-14 - T[1850-1926] 9.0E-16 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| MPDZ_HUMAN | 42.506 % | 527 | 4.0E-155 |
| INADL_HUMAN | 36.19 % | 421 | 3.4E-120 |
| LNX2_HUMAN | 31.902 % | 196 | 3.6E-52 |