- Transcript 'Moocci.CG.ELv1_2.S59...' >
- Transcript 'Boleac.CG.SB_v3.S403...' >
- Transcript 'Phfumi.CG.MTP2014.S1...' >
- Transcript 'Phmamm.CG.MTP2014.S1...' >
- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chrUn.g30249.01.t
Possible name(s)
RAB11A; RAB13; RAB28
Gene model
Location
chrUn [198,201,235 / 198,204,817]
Amino acid sequence
Length: 600
>Boschl.CG.Botznik2013.chrUn.g30249.01.p
HPDIPYGIGIMRDPQSSSGVCTPRRNLNFGDVAPEIVQLAINYASDYLDYMDNLPFDLQR
NVTRLREVDKKCREYVKEIEQLYDSFLKENATSNKARRFNLLQIRRLFGLCKELGDEKIS
IVQSISEVIESRNKQMEFECKRFVYAYEPDAKLENEKREKEKLDARGHKRSRRQRNHNSS
ENKDKVTTQKEQEKVPKSMYYDDTDEPPSKVVVSSPSNEQPSIPIPVPALTRAALREEDN
KRACSRSKEKEDIKIDKNADQSNTSVVATKTSSDTVTVSTASTYASTSKSKSSSSNPTST
KSNGKKKKKRKPNKMHSDRHQSNSDDISPLLDLPIDPDEPTYCLCQQVSFGQMIGCDNPK
CPIEWFHFSCIFTCKYLIMSDSEDETEDIMLKIVVIGDGASGKTSLITRYTQDQFGKQYD
QTVGLDFFLKRIDLSDKKNVTLKIWDIGGQTLGGNMLDKYVYGADGVLLVYDITNHRSFE
NLEDWYDAVSKMCPDKKLHFALVANKSDLEHMRKVTRDKHNTFAKKNEFASHYVSAKTGE
SVPLCFKALAAEILGIKLSRVQTEQAHRIVTAEIVSSNSASVGKTAAIPTKQKSSFCMLQ
Nucleotide sequence
Length: 1,803
>Boschl.CG.Botznik2013.chrUn.g30249.01.t
GCATCCTGATATACCGTATGGGATTGGAATTATGAGAGATCCTCAGTCTTCTTCCGGCGT
CTGCACTCCGAGAAGAAACCTCAATTTCGGAGATGTAGCCCCAGAAATCGTCCAGCTAGC
AATAAACTATGCTTCCGACTACTTGGATTACATGGACAATCTACCGTTCGATCTACAAAG
AAACGTAACCAGATTACGGGAAGTTGACAAGAAGTGTCGGGAATATGTGAAGGAAATCGA
GCAACTTTACGACAGTTTCCTAAAAGAGAATGCCACCAGTAACAAAGCACGCAGATTCAA
TTTGCTACAAATTCGTCGCCTGTTCGGATTGTGTAAAGAATTGGGCGATGAGAAGATATC
GATAGTCCAGAGCATATCGGAGGTGATAGAAAGCCGAAACAAGCAAATGGAATTCGAATG
CAAGCGATTCGTGTACGCATACGAGCCTGATGCAAAGTTAGAGAATGAAAAACGTGAAAA
AGAGAAGTTAGACGCACGTGGACACAAGAGATCGAGACGACAACGTAATCACAATTCCTC
CGAGAACAAAGACAAGGTAACAACGCAAAAAGAGCAAGAAAAAGTACCGAAATCCATGTA
TTACGACGACACAGATGAACCCCCGTCTAAAGTCGTTGTTTCATCCCCAAGCAACGAGCA
GCCATCAATTCCTATTCCAGTACCGGCTCTGACACGAGCTGCTTTGCGAGAGGAAGATAA
CAAACGTGCCTGTAGCCGTTCCAAAGAGAAAGAAGACATCAAAATTGATAAAAATGCCGA
CCAATCAAACACGAGCGTCGTCGCTACTAAAACTTCATCGGATACAGTCACGGTTTCAAC
TGCTTCTACTTATGCGTCGACCAGCAAGAGCAAATCTTCAAGCTCAAATCCAACCTCTAC
AAAGTCGAACGGTAAAAAGAAGAAAAAGCGTAAGCCGAACAAAATGCATTCCGATCGACA
CCAAAGCAACAGCGATGATATATCGCCACTTTTGGATCTTCCTATCGATCCGGACGAGCC
CACTTACTGCCTCTGCCAACAGGTTTCCTTCGGACAGATGATTGGTTGTGATAATCCAAA
ATGTCCGATAGAATGGTTTCACTTCTCATGGATATTTACATGTAAATACCTCATAATGTC
GGACTCTGAGGATGAAACTGAGGATATTATGTTGAAAATTGTTGTAATTGGGGATGGTGC
CAGTGGGAAAACGTCTCTCATTACCAGATACACTCAAGATCAGTTTGGGAAGCAGTACGA
TCAAACGGTCGGGTTGGATTTTTTCTTGAAAAGAATCGATCTGTCGGATAAGAAAAATGT
TACTCTGAAAATATGGGACATTGGCGGACAAACCCTCGGTGGTAACATGCTGGACAAATA
TGTTTACGGTGCTGACGGTGTCTTGCTTGTGTATGACATCACAAACCATCGGAGCTTTGA
GAACCTGGAGGATTGGTACGATGCGGTCAGCAAAATGTGCCCTGACAAGAAGCTTCATTT
TGCGCTTGTTGCGAATAAAAGTGACCTTGAACACATGAGAAAGGTAACGAGAGATAAACA
TAACACTTTCGCAAAGAAAAATGAGTTTGCGAGCCATTACGTTTCGGCGAAAACAGGCGA
ATCTGTTCCTTTGTGCTTTAAAGCTTTGGCAGCTGAAATTTTAGGTATTAAATTATCGAG
AGTTCAAACAGAACAGGCTCATCGCATTGTGACTGCTGAAATAGTTAGTTCGAATTCAGC
ATCGGTAGGAAAAACTGCCGCTATCCCCACGAAGCAGAAAAGTTCTTTTTGTATGTTACA
ATG
| SMART |
ING_N_histone_binding (IPR024610) - T[43-143] 5.4E-23 |
| Pfam |
ING_N_histone_binding (IPR024610) - T[44-142] 3.8E-22 |
| SUPERFAMILY |
Znf_FYVE_PHD (IPR011011) - T[314-371] 1.26E-13 |
| Gene3D |
Znf_RING/FYVE/PHD (IPR013083) - T[333-376] 3.5E-17 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[386-557] 9.73E-46 |
| TIGRFAM |
Small_GTP-bd_dom (IPR005225) - T[391-542] 2.5E-20 |
| Pfam |
Small_GTPase (IPR001806) - T[392-554] 3.4E-43 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RAB13_HUMAN | 35.928 % | 116 | 5.81E-30 |
| RAB28_HUMAN | 60.268 % | 279 | 7.86E-91 |
| RB11A_HUMAN | 35.429 % | 117 | 6.56E-30 |