Aniseed - Transcript Card

Transcript Model

Transcript Id

Boschl.CG.Botznik2013.chrUn.g31255.01.t

Possible name(s)

DDX27; DDX47; DDX49

Gene model

Boschl.CG.Botznik2013.chrUn.g31255

Location

chrUn [204,349,245 / 204,354,131]

Sequences

Amino acid sequence

Length: 399

>Boschl.CG.Botznik2013.chrUn.g31255.01.p
MEASGIDTSENAEKIEAVSELLQNDADVTFKSLGLKDVLCETCEELKWKIPSKIQQESIP
VAIEGKDVIGLAETGSGKTGAFCLPILQALLDTPQRIFALVLTPTRELAFQIDEHFKALG
SAIGIKTAVVVGGVDMMGQSIMLAKKPHVIIATPGRLIDHLEKTKGFTLRTLKFLVMDEA
DRILNMDFEAEVDKILKVIPRERQTFLFSATMTKKVKKLQRAALRNPVKCAVNTKYHTVD
KLQQYYIFIPAKEKDSYLVSVLNEHAGNSFIVFCSTCANTQRTALLLRSLGFAAIPLHGQ
MLQPKRLGALNKFKSKSSSILLATDVASRGLDIPHVDFVINFDIPTHSKDYIHRVGRTAR
AGRAGKSITFVTQYDVELYQRIEHLIGKKLPLYETREDE

Nucleotide sequence

Length: 1,197

>Boschl.CG.Botznik2013.chrUn.g31255.01.t
TGGAAGCTAGTGGCATCGACACCAGTGAAAACGCAGAAAAGATTGAAGCCGTGTCGGAGC
TGCTGCAGAATGATGCTGATGTCACATTTAAATCTCTCGGCTTGAAGGACGTCCTGTGTG
AAACCTGCGAAGAGCTGAAATGGAAGATCCCTTCAAAAATACAGCAGGAATCCATTCCGG
TTGCCATTGAAGGAAAAGATGTCATAGGTCTTGCAGAAACGGGTTCTGGAAAAACAGGGG
CATTCTGCTTACCAATCCTACAAGCTCTCCTTGACACTCCTCAGAGAATATTTGCGCTCG
TGCTGACCCCCACACGCGAGTTGGCATTTCAAATCGACGAACACTTCAAAGCGCTCGGCT
CCGCTATCGGTATAAAAACAGCTGTGGTGGTTGGTGGCGTGGATATGATGGGACAGTCAA
TAATGTTGGCAAAGAAGCCCCACGTAATTATTGCCACACCAGGGAGGTTGATCGATCATC
TTGAAAAAACAAAGGGATTTACGTTGCGCACATTGAAATTTCTTGTCATGGACGAAGCTG
ACAGAATTTTGAACATGGACTTTGAAGCTGAAGTTGATAAGATTTTGAAGGTGATTCCAA
GAGAGAGGCAAACATTCCTCTTCTCCGCTACTATGACCAAAAAAGTGAAAAAGCTTCAGC
GTGCGGCGTTGAGAAATCCTGTGAAATGCGCCGTCAATACGAAGTATCATACAGTCGATA
AGTTGCAACAATATTATATATTTATTCCCGCCAAGGAAAAGGATAGCTATCTAGTCTCGG
TGCTAAATGAGCATGCAGGCAACTCCTTCATTGTATTCTGCAGCACTTGTGCCAATACGC
AAAGAACAGCTCTATTATTACGCAGTCTTGGGTTTGCCGCGATACCTTTGCACGGTCAAA
TGCTACAGGCTAAGCGGCTCGGTGCGCTTAACAAATTTAAAAGCAAATCAAGCTCAATTT
TACTGGCAACCGATGTCGCTAGCCGAGGACTTGATATACCCCACGTGGATTTTGTGATCA
ATTTTGACATTCCGACGCATTCTAAAGATTACATTCACAGAGTGGGTCGCACAGCCCGAG
CAGGAAGAGCGGGAAAGTCGATCACATTTGTCACGCAGTATGATGTTGAGCTTTATCAAA
GGATAGAACATCTGATTGGCAAAAAGTTACCTCTGTACGAGACTCGTGAAGATGAGG

InterProScan

ProSiteProfiles	RNA_helicase_DEAD_Q_motif (IPR014014) - T[28-56] 8.842
SMART	Helicase_ATP-bd (IPR014001) - T[47-245] 5.4E-55
Pfam	DEAD/DEAH_box_helicase_dom (IPR011545) - T[53-219] 1.0E-47
ProSiteProfiles	Helicase_ATP-bd (IPR014001) - T[59-230] 32.37
SUPERFAMILY	P-loop_NTPase (IPR027417) - T[97-383] 4.48E-72
ProSitePatterns	RNA-helicase_DEAD-box_CS (IPR000629) - T[176-184] .
CDD	Helicase_C (IPR001650) - T[241-370] 2.99946E-39
ProSiteProfiles	Helicase_C (IPR001650) - T[241-399] 22.753
Pfam	Helicase_C (IPR001650) - T[253-362] 1.6E-29
SMART	Helicase_C (IPR001650) - T[281-362] 6.0E-31

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
DDX27_HUMAN	40.71 %	273	1.24E-84
DDX47_HUMAN	76.667 %	642	0
DDX49_HUMAN	49.602 %	370	3.12E-125