- Transcript 'Haaura.CG.MTP2014.S4...' >
- Clone 'cilv083o20' >
- Transcript 'Phmamm.CG.MTP2014.S2...' >
- Transcript 'Moocci.CG.ELv1_2.S39...' >
- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chrUn.g33596.01.t
Possible name(s)
SELE; SELP; SVEP1
Gene model
Location
chrUn [219,471,003 / 219,480,757]
Amino acid sequence
Length: 414
>Boschl.CG.Botznik2013.chrUn.g33596.01.p
VNAREWVDGKRVGNEAFGIWLTSQKRSTILRNLNPGREYLIRVQAYAKDRPIGSRPQKVV
RTSQQCYTCNAMPDNEQCKGPEKEYECPHDKDACLNEVRYSKGVPKITKRCAQWRPELGR
QIQNGRDVTIACSGRENIKDVACKCMCRSNLCNEVEVPCLNECFKELPTPDNSYIRCTKE
EKVGSVCRWFCLPGYKIKGTSRSDCRRDRTWSVLNPPECIEDPNRKQTVDDKFNCPNLEP
GENADMTCTNANKPGSVCTFKCNSNNILRGSFERECDGSTSKWTGVAHTCVEITCSVIEE
RNGLTKECTANETIGSVCDFSCPEDRKFLGSRRLICQGTGRWSSTIPRCGEPDCSVLPSL
FDNVLMECSRIPNRETGKMCLFSCKEGYEINGPTRTFCYEGNSWTNNSPTCRRE
Nucleotide sequence
Length: 1,246
>Boschl.CG.Botznik2013.chrUn.g33596.01.t
GTGTAAACGCGCGAGAATGGGTGGACGGGAAGAGAGTCGGGAACGAAGCTTTCGGAATTT
GGCTAACCAGCCAGAAAAGATCGACGATACTGCGCAATCTCAATCCAGGGAGAGAATACC
TCATAAGGGTGCAAGCGTACGCGAAAGATCGCCCGATCGGGTCACGCCCGCAAAAAGTGG
TCAGGACTTCTCAACAATGCTACACGTGTAACGCAATGCCTGACAATGAGGAGTGCAAAG
GGCCGGAGAAGGAGTACGAATGTCCCCACGACAAAGACGCGTGCCTAAACGAGGTCCGAT
ACTCGAAAGGAGTTCCAAAAATCACGAAGCGCTGCGCGCAATGGCGACCGGAACTAGGCA
GACAGATCCAAAACGGACGTGACGTAACAATCGCTTGTTCCGGACGGGAAAGTATCAAAG
ATGTTGCGTGCAAATGTATGTGTAGAAGCAACCTGTGCAATGAGGTTGAAGTTCCCTGCT
TGAACGAATGCTTTAAGGAACTGCCAACGCCAGACAACAGTTACATCAGATGTACTAAGG
AGGAAAAGGTCGGCTCAGTATGCAGGTGGTTCTGTCTGCCGGGTTACAAAATTAAAGGCA
CGTCGAGGTCGGATTGTAGGAGGGATCGAACGTGGAGTGTCCTGAATCCGCCTGAATGTA
TCGAGGACCCGAACCGAAAGCAGACAGTTGATGACAAATTTAACTGCCCGAATCTAGAAC
CTGGAGAAAACGCCGACATGACCTGCACCAATGCCAACAAGCCTGGTTCCGTCTGTACTT
TCAAATGTAATTGAAACAACATACTTCGCGGCAGTTTTGAGAGGGAATGCGACGGCTCCA
CCAGCAAATGGACCGGAGTTGCTCATACGTGCGTAGAAATCACTTGCAGCGTGATAGAGG
AGAGAAACGGACTGACTAAAGAGTGCACGGCCAACGAAACGATCGGATCGGTCTGCGACT
TCTCCTGTCCCGAAGACAGAAAGTTTCTTGGTAGCCGAAGGCTGATTTGTCAAGGGACGG
GGCGTTGGTCTTCCACCATTCCAAGATGCGGGGAACCAGACTGCTCCGTTTTGCCATCTC
TGTTTGATAACGTTCTGATGGAGTGTTCTCGCATCCCGAACCGCGAGACCGGCAAGATGT
GTTTGTTCTCTTGCAAAGAGGGTTACGAAATTAACGGGCCAACGCGAACGTTCTGTTACG
AAGGCAACAGCTGGACTAATAATTCACCGACATGCAGACGTGAGTA
| ProSitePatterns |
CD59_antigen_CS (IPR018363) - T[65-111] . |
| ProSiteProfiles |
Sushi_SCR_CCP_dom (IPR000436) - T[161-221] 8.613 - T[233-292] 7.609 - T[293-344] 5.63 - T[347-413] 10.561 |
| SMART |
Sushi_SCR_CCP_dom (IPR000436) - T[164-219] 3.2E-4 - T[235-290] 1.1E-7 - T[295-349] 2.5E-5 - T[354-411] 2.0E-8 |
| CDD |
Sushi_SCR_CCP_dom (IPR000436) - T[166-220] 3.21035E-6 - T[235-291] 5.42837E-7 - T[302-349] 9.74583E-6 - T[358-412] 2.69004E-6 |
| SUPERFAMILY |
Sushi/SCR/CCP_sf (IPR035976) - T[167-221] 1.06E-7 - T[234-298] 2.78E-9 - T[289-349] 2.5E-10 - T[346-412] 7.09E-10 |
| Pfam |
Sushi_SCR_CCP_dom (IPR000436) - T[168-219] 3.3E-5 - T[310-349] 9.5E-5 - T[354-411] 2.2E-5 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LYAM3_HUMAN | 27.652 % | 92 | 5.67E-20 |
| LYAM2_HUMAN | 28.794 % | 92.8 | 2.64E-20 |