- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chrUn.g33709.01.t
Possible name(s)
ALYREF; POLDIP3; RBM8A
Gene model
Location
chrUn [220,193,838 / 220,201,846]
Amino acid sequence
Length: 225
>Boschl.CG.Botznik2013.chrUn.g33709.01.p
KPSTRRRDSVSPRPSRPISKRAMEVDSDSDYEEYRKYRKQRRRQTIDDVEEMEVTEKSDP
IDLRPMISKQAEKAVDQNPASVGPSPIEGTKLKVFNLHPVVSEDDILELFSVIGPVRRAR
LVRPGEAEVVYIRHENAMAAYKKYNSRDLDGLPTTLGGVDGLCDNVRVLQASRCRSSWMK
DIKTTKKRSDVADVTELHSGVLQQALFKGGSTGTSTRPVVFTVKI
Nucleotide sequence
Length: 678
>Boschl.CG.Botznik2013.chrUn.g33709.01.t
GAAGCCATCCACTCGTCGCAGAGACTCTGTTTCACCCAGGCCTTCGAGACCCATCGGTAA
ACGTGCTATGGAGGTTGACTCCGACTCTGATTATGAGGAGTACAGGAAATACCGAAAGCA
AAGACGACGACAAACCATAGATGACGTCGAGGAGATGGAAGTCACTGAGAAATCTGATCC
AATCGACCTGCGACCTATGATATCAAAACAAGCAGAGAAAGCAGTGGATCAGAATCCTGC
ATCCGTCGGTCCTAGCCCCATCGAAGGCACGAAGCTCAAAGTATTTAATCTGCACCCCGT
TGTCTCGGAAGATGACATATTGGAGCTATTCAGCGTGATAGGGCCGGTTCGACGCGCCAG
ATTGGTCAGGCCTGGCGAGGCTGAAGTCGTGTATATCCGGCATGAGAACGCGATGGCGGC
GTACAAGAAATACAACAGCCGCGATCTAGACGGTTTGCCAACCACGCTTGGCGGCGTTGA
TGGGTTATGTGATAATGTTCGTGTCTTACAGGCCAGCCGATGCAGATCAAGCTGGATGAA
AGATATCAAGACTACGAAGAAAAGGTCTGACGTCGCCGACGTGACTGAGCTACACAGTGG
CGTTTTGCAGCAAGCGCTCTTCAAAGGCGGCAGCACTGGCACTTCAACGCGTCCCGTGGT
TTTTACAGTGAAAATATA
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[12-157] 7.0E-13 |
| PANTHER |
PDIP3 (IPR034785) - T[30-153] 6.9E-38 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[72-153] 4.43E-14 |
| CDD |
PDIP3_RRM (IPR034784) - T[90-153] 8.94173E-31 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[90-151] 9.866 |
| SMART |
RRM_dom (IPR000504) - T[91-157] 5.3E-9 |
| Pfam |
RRM_dom (IPR000504) - T[94-151] 4.2E-9 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PDIP3_HUMAN | 39.073 % | 104 | 3.66E-26 |