- Transcript 'Phfumi.CG.MTP2014.S5...' >
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- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chrUn.g35856.01.t
Possible name(s)
CDH13; CDH2; CDH4
Gene model
Location
chrUn [234,564,142 / 234,567,838]
Amino acid sequence
Length: 628
>Boschl.CG.Botznik2013.chrUn.g35856.01.p
SHNVFSHGAAFVFFIINITVLSTLPYASADYGYPDQRLSEGPLFNMVPVFVVQIFSMNRS
TVWYNISGDYTTEFSINHDTGHIYQIEELDREKKDVYSMIGIAKDAKGHQTEKPALFKIL
VTDLNDEVPVFNESTLIGAVAESDEYGPSSPPFMRVEATDADIGFNAIIEYSIQEGSDTP
PSASGSRFLIDSSTGDVRQNVALDYESNPGLLRFTVKATDNGGSIFGSNSVTAEVVVSVK
DSNDHAPIFGSLTGVTLLESSKLGKSLYKMHASDVDEGVNEKVFFEITAGNIDGTFSIAS
KLLGSNDSLGQLYLLKPLDHERNANYVLTIKAFNKEASNAADDTYSTIQTLKVTVIDVNE
PPIFEDTHYVIIITEAPAPTEPIPVLRVSAKDKDFKGNQTVSYDLVDEQQWFTINSENGL
ISVVGSVDYEAPGVIDGAYRLKVTATDNYDNGPPAHAREFVDITIYDINDNAPVPDWAQS
QNGDYVVVCDSPPNATIKFIKAADIDSSVNGSKFTFQFDQSVDTEKWGFETIDSESWNII
AKFTEYNLTSESENVTLIFTITDSGDNPMTGRSTLDVTVCRCDEQFNCAPASTAEFQHSI
IFGMIGVFFAVGITIFVIDYCQQKARRS
Nucleotide sequence
Length: 1,889
>Boschl.CG.Botznik2013.chrUn.g35856.01.t
CTCACATAATGTATTTTCGCATGGGGCTGCGTTTGTATTCTTCATTATCAACATCACGGT
GCTGTCCACCCTTCCCTATGCTTCAGCGGATTATGGTTATCCCGACCAAAGACTCTCGGA
AGGGCCGCTATTTAATATGGTTCCGGTATTTGTGGTTCAAATTTTTTCAATGAATCGTTC
GACAGTATGGTATAATATATCCGGTGATTATACAACCGAATTCAGCATTAATCATGATAC
TGGACACATCTACCAGATCGAAGAGTTAGATAGGGAAAAGAAAGATGTTTATAGTATGAT
TGGGATAGCTAAAGATGCCAAAGGACACCAAACGGAGAAGCCAGCTTTATTCAAAATTCT
TGTTACTGATTTAAATGATGAGGTCCCAGTGTTCAACGAATCTACTTTGATTGGAGCCGT
GGCCGAAAGCGACGAGTATGGTCCGTCATCTCCGCCATTCATGCGAGTTGAGGCGACAGA
CGCAGATATTGGGTTTAATGCGATAATTGAGTACTCTATACAAGAAGGAAGCGATACTCC
GCCATCCGCATCGGGTAGTAGATTCCTTATCGACTCATCGACAGGAGATGTTAGACAGAA
TGTCGCCCTTGACTACGAAAGTAACCCAGGGCTGCTGCGATTTACTGTGAAGGCCACTGA
TAATGGTGGTAGCATTTTTGGTTCCAACTCCGTTACGGCAGAAGTTGTCGTATCTGTCAA
AGATTCTAATGACCATGCCCCTATTTTCGGCTCTCTCACAGGCGTGACACTTTTGGAATC
TTCGAAACTAGGGAAGTCGCTGTACAAAATGCATGCGTCTGATGTGGATGAAGGTGTCAA
CGAAAAGGTATTTTTTGAAATAACAGCCGGAAATATCGATGGAACCTTCAGCATTGCTTC
GAAGCTGCTTGGTAGTAACGATAGTCTTGGACAGTTATATCTTCTAAAACCACTCGACCA
TGAACGCAATGCAAACTACGTTTTGACGATTAAAGCTTTCAATAAAGAGGCATCGAATGC
TGCCGATGATACATACTCAACTATTCAGACTTTGAAAGTCACGGTGATAGATGTCAACGA
ACCGCCGATTTTCGAAGATACCCATTACGTAATTATCATTACCGAAGCCCCTGCTCCCAC
TGAACCAATACCAGTTCTCAGAGTATCCGCAAAGGACAAAGATTTCAAAGGAAATCAAAC
AGTATCGTACGATTTGGTAGATGAACAACAGTGGTTTACAATAAATTCCGAAAACGGTCT
AATCAGCGTCGTAGGATCCGTAGATTACGAAGCACCTGGCGTTATCGATGGCGCATATCG
GCTCAAAGTCACCGCCACCGATAACTACGATAATGGACCACCAGCACACGCCCGTGAATT
TGTTGATATCACCATTTACGATATCAATGATAACGCGCCTGTGCCAGACTGGGCTCAAAG
TCAAAATGGTGATTACGTAGTCGTCTGTGATAGTCCACCCAATGCCACTATTAAATTCAT
CAAGGCCGCGGATATCGATTCATCAGTAAATGGCAGTAAGTTCACTTTCCAATTTGATCA
ATCCGTGGATACAGAAAAATGGGGTTTCGAAACTATTGACAGCGAAAGTTGGAACATTAT
TGCCAAGTTTACTGAATATAATTTGACTTCCGAATCAGAAAATGTTACTCTGATATTCAC
CATCACAGATTCCGGTGACAATCCTATGACGGGAAGGTCTACCTTAGATGTGACAGTGTG
CAGGTGTGATGAACAGTTTAACTGCGCCCCCGCTAGCACAGCCGAATTTCAGCACTCAAT
CATTTTCGGGATGATCGGTGTTTTCTTTGCTGTTGGCATTACAATTTTCGTGATTGATTA
TTGCCAACAAAAAGCCCGACGCAGCTGAA
| SMART |
Cadherin (IPR002126) - T[49-129] 1.9E-6 - T[156-247] 2.9E-20 - T[270-363] 3.3E-9 - T[388-473] 1.4E-16 |
| SUPERFAMILY |
Cadherin-like (IPR015919) - T[56-131] 2.0E-11 - T[119-250] 1.7E-19 - T[243-357] 1.57E-15 - T[360-474] 1.44E-18 - T[468-580] 1.71E-9 |
| PRINTS |
Cadherin (IPR002126) - T[72-91] 1.2E-16 - T[211-223] 1.2E-16 - T[228-247] 1.2E-16 - T[362-375] 1.2E-16 - T[417-443] 1.2E-16 - T[457-474] 1.2E-16 |
| Pfam |
Cadherin (IPR002126) - T[143-239] 1.7E-11 - T[256-348] 6.2E-12 - T[384-465] 6.4E-13 |
| ProSitePatterns |
Cadherin_CS (IPR020894) - T[237-247] . - T[463-473] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CADH4_HUMAN | 28.273 % | 168 | 7.55E-44 |
| CADH2_HUMAN | 30.566 % | 161 | 1.01E-41 |
| CAD13_HUMAN | 30.241 % | 177 | 1.94E-47 |