Aniseed - Transcript Card

Transcript Model

Transcript Id

Boschl.CG.Botznik2013.chrUn.g36628.01.t

Possible name(s)

PPP1R10

Gene model

Boschl.CG.Botznik2013.chrUn.g36628

Location

chrUn [240,156,248 / 240,162,184]

Sequences

Amino acid sequence

Length: 636

>Boschl.CG.Botznik2013.chrUn.g36628.01.p
MRHCKKLVGRCIYLNILRVTKNEEVLRKFMSGGGWKILNKWISDAKETDNEPVIHEILKL
LKRLPVALQDLRVNNTAKIVKQLAKSQNSKIQAIATVIVQSWLAVITVNSAPSEAELLKK
KKVKEKEKKKVKAESNAKPQTKRESKIPPPVMKAPSFAKFRKTGLETETAMAEKKPKVRQ
GQPIRKRNSTESAGPVPDKKMKAETKTTKKIMISDSEGFMDALNSASNPAPLMLKKVKRR
PTKPVTISNTANSNKTQQSEEVVSGDANDFSAAELLSRLSPQRENTSPVPAEPPKPKLNK
YGKPMKTVRFKSDEYIADVRYFEVDENERVNVSTQNFKDAQHREMLIERELMKGGKIESS
GNGDWQRPTVIDGLDLLTVPGCNSVEKDIQTEREKTVLMSIFLSKEMVPESPAEPDPEPY
EIMQPKIIPFEDESAVAELMETDQEVGSSADDVILKNLKAGMQAEQGADVFTANLKRILE
TASAMKPSAKEDNATPVAASSPPAMAQPPHQPMVWEGAPPMVDPNMMVMNGQMTFFPGQP
MMVPDPNFYPPNWNPNMGPPRPMYDQSWGPRPNWRGSRNGPPSRGRNGRYLESVSLSFLV
VLSNKYKMPSEISMFIRNFQRMTLAGCTGQESYLAE

Nucleotide sequence

Length: 1,911

>Boschl.CG.Botznik2013.chrUn.g36628.01.t
TGCGACATTGCAAGAAACTGGTTGGTCGTTGCATTTACCTCAATATCCTTCGAGTGACGA
AAAATGAAGAAGTACTGCGAAAATTCATGTCCGGGGGAGGCTGGAAAATACTGAACAAAT
GGATTTCAGATGCGAAGGAGACTGATAACGAACCCGTCATTCATGAAATTTTGAAGGTGC
TTAAGCGACTGCCTGTGGCTCTGCAAGATCTTCGTGTGAATAATACAGCCAAGATAGTAA
AACAACTTGCTAAATCTCAGAATTCAAGAATACAGGCAATTGCTACTGTAATTGTGCAAT
CGTGGTTAGCGGTCATCACCGTTAACTCGGCACCTTCGGAAGCAGAGCTGCTAAAGAAAA
AGAAGGTGAAAGAGAAGGAGAAAAAGAAGGTGAAAGCGGAGTCCAATGCCAAACCACAAA
CAAAACGGGAATCCAAGATCCCACCGCCTGTGATGAAGGCTCCTTCCTTTGCCAAATTTC
GAAAAACAGGCTTGGAAACAGAGACGGCCATGGCCGAGAAAAAGCCAAAAGTGAGACAAG
GTCAACCCATTCGAAAGCGGAATAGTACAGAATCGGCAGGTCCCGTTCCCGATAAAAAAA
TGAAAGCGGAAACGAAAACAACCAAGAAAAGCATGATATCAGATTCGGAAGGTTTCATGG
ACGCCCTGAATTCTGCGAGTAATCCTGCTCCACTAATGTTAAAAAAGGTGAAGCGGAGAC
CTACAAAACCTGTTACGATATCGAATACTGCAAACTCGAATAAAACACAACAATCAGAGG
AAGTTGTTTCGGGAGATGGAAATGATTTCAGTGCGGCAGAGCTTCTCAGTAGGCTCAGTC
CGCAGCGTGAAAATACGTCACCCGTACCTGCAGAACCGCCCAAGCCAAAATTGAATAAAT
ATGGGAAGCCAATGAAGACGGTCCGATTCAAATCTGACGAGTACATAGCCGATGTGCGGT
ATTTTGAGGTGGATGAGAATGAACGAGGGAACGTCTCCACGCAAAACTTCAAGGACGCTC
AGCACCGAGAAATGTTGATCGAGCGGGAGTTGATGAAAGGCGGTAAAATCGAATCTTCCG
GAAATGGAGATTGGCAACGGCCGACAGTTATTGACGGATTGGATTTATTAACTGTTCCGG
GGTGCAACAGGGTCGAGAAAGATATTCAGACGGAGCGCGAGAAGACAGTTCTGATGTCTA
TATTTTTGAGTAAAGAAATGGTCCCGGAATCTCCAGCGGAACCGGATCCAGAGCCGTACG
AGATTATGCAACCCAAGATCATTCCGTTTGAAGACGAAAGTGCAGTAGCTGAATTGATGG
AGACGGACCAAGAAGTTGGCTCTAGTGCCGACGACGTCATTTTGAAAAATCTGAAAGCTG
GTATGCAAGCGGAACAAGGAGCTGACGTTTTCACTGCGAATTTGAAGAGAATTCTCGAGA
CTGCTTCAGGTATGAAACCAAGCGCGAAAGAAGACAACGCTACTCCGGTCGCAGCGTCAT
CACCACCGGCAATGGCACAGCCACCTCACCAACCAATGGTGTGGGAGGGAGCCCCACCCA
TGGTGGACCCCAACATGATGGTGATGAACGGACAAATGACGTTTTTCCCGGGGCAACCGA
TGATGGTGCCCGATCCGAATTTTTATCCACCCAACTGGAATCCAAACATGGGCCCGCCCA
GACCGATGTACGATCAAAGCTGGGGACCCCGGCCCAATTGGAGAGGTAGCCGAAACGGCC
CGCCATCACGTGGCAGAAATGGTAGGTATTTGGAAAGTGTGTCGCTTTCTTTTTTGGTTG
TTCTTTCAAATAAATACAAAATGCCGAGTGAAATTTCCATGTTTATTCGAAATTTCCAAC
GCATGACGCTTGCGGGTTGCACAGGGCAGGAATCGTACCTCGCAGAGTGAT

InterProScan

SUPERFAMILY	TFIIS/LEDGF_dom_sf (IPR035441) - T[25-111] 3.79E-12
Gene3D	TFIIS/LEDGF_dom_sf (IPR035441) - T[36-120] 9.3E-8
ProSiteProfiles	TFIIS_N (IPR017923) - T[36-109] 13.539
SMART	TFIIS/CRSP70_N_sub (IPR003617) - T[37-108] 0.0014

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
PP1RA_HUMAN	33.598 %	197	1.85E-53