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- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chrUn.g36874.01.t
Possible name(s)
COL12A1; COL7A1; FNDC7
Gene model
Location
chrUn [241,791,712 / 241,798,037]
Amino acid sequence
Length: 555
>Boschl.CG.Botznik2013.chrUn.g36874.01.p
PSGFTKTVNSTANATTLTNLPSGTCFTIEITSVNSFGESSIIRGTDICTRPSAPDFQISE
VTANSISVTWEQVSSAIGYVIEVIRTNDSTNFSPDDQIVRTESVTIPNLSPGTNYTIMLA
TVGIQDNSAKTSKIQITVPSAPTLTLTNRTTDMLLLVWAAVEGADDYLIQYKKQSDAVYL
SITTSEYSGLLKSLEPGTMYDIRVSAQNSAGSSQGNASHSTVISSGPNFVISGTTSSGFD
ITITDVNDRESFEIEVSPDGAVKSTTNTSTTISGLSSGARYTVRVIVKYVYVGQSSGDIT
QGVTILTSAPTNFARVSNTQDQRIQLSWDAVPNAVSYNITVNGQMYSYTNSPAIVATVLG
TTYNYTIQAVNSQGQLGDPAYTTVAADPANMFTLEFTLSSDFSFSVELRDTSSQLYKDYS
RTVVTALTNIFTGVSGIVEITVIGFFEGSVIARVNTTVSDPISNETDLIAAFDGTAASKA
DFNTSQPLTTNINECLNIPSVCDGSATCEDTDASFECSCNSGYTGDGTYLTFGLRRAVFA
LITMRIKIVSSFMTV
Nucleotide sequence
Length: 1,669
>Boschl.CG.Botznik2013.chrUn.g36874.01.t
CCTTCGGGATTCACAAAGACTGTCAATTCCACTGCGAATGCGACTACGTTGACCAATCTT
CCAAGCGGTACATGTTTCACCATTGAAATAACGTCGGTCAATAGTTTCGGAGAGAGCTCC
ATCATACGAGGCACTGATATTTGTACGAGACCATCGGCACCTGATTTCCAAATTTCCGAA
GTCACCGCCAATTCGATCTCGGTGACTTGGGAACAAGTGTCAAGCGCGATAGGATACGTC
ATCGAAGTCATCCGTACCAACGACAGCACCAATTTCAGTCCGGACGACCAAATAGTTAGG
ACCGAGTCGGTGACGATACCAAATTTATCGCCGGGGACCAATTACACGATCATGCTGGCT
ACGGTTGGCATTCAGGACAACAGTGCCAAGACTTCGAAGATTCAGATTACGGGACCAAGC
GCTCCGACTCTCACGCTGACAAACAGGACCACAGACATGTTATTGCTGGTCTGGGCTGCA
GTCGAAGGTGCTGACGATTATCTCATCCAATACAAGAAGCAATCCGATGCTGTCTACTTG
AGTATAACTACCTCCGAATACAGTGGTTTGCTTAAAAGCCTGGAGCCTGGCACGATGTAT
GACATCAGAGTCAGTGCCCAGAATTCAGCTGGTTCTTCGCAAGGCAACGCGTCACATTCC
ACAGGGATATCATCCGGACCCAACTTTGTAATATCTGGTACAACATCCAGCGGTTTTGAC
ATCACCATAACGGACGTCAACGACAGAGAAAGCTTTGAAATTGAAGTTTCTCCGGGTGGT
GCTGTGAAGTCAACAACAAATACCTCGACAACCATATCGGGACTCTCATCAGGAGCGCGC
TACACTGTACGGGTGATTGTGAAATATGTGTATGTGGGTCAAAGCTCTGGTGATATCACA
CAAGGCGTGACAATATGGACTTCGGCGCCAACCAACTTTGCACGAGTATCAAACACCCAG
GATCAGAGAATTCAGCTTTCGTGGGACGCCGTACCCAACGCGGTATCCTACAATATCACC
GTCAACGGTCAGATGTACAGCTACACGAATTCGCCAGCTATAGTCGCGACCGTTCTCGGC
ACCACGTACAACTACACGATACAGGCTGTGAATTCGCAAGGGCAACTGGGAGATCCTGCC
TACACGACTGTTGCTGCAGGCCCAGCCAACATGTTCACACTCGAATTCACTCTGAGCTCG
GATTTCTCTTTCTCGGTTGAGTTGAGAGATACGTCGTCGCAGCTTTACAAAGACTACAGC
CGGACTGTGGTGACTGCGCTAACCAACATCTTCACGGGAGTCAGCGGCATCGTTGAAATT
ACAGTCATCGGATTCTTTGAAGGAAGCGTCATCGCCAGGGTCAATACTACGGTCAGCGAC
CCAATCAGTAACGAGACTGACTTGATAGCAGCGTTCGATGGCACCGCTGCTAGCAAAGCG
GATTTCAACACCAGTCAGCCGTTAACTACAAGTATCAACGAATGTTTGAATATACCAAGT
GTATGTGATGGTAGCGCGACGTGTGAAGATACTGATGCATCGTTCGAGTGTAGCTGCAAT
TCTGGCTACACTGGGGATGGTACGTATTTGACTTTTGGTCTGCGAAGAGCAGTCTTCGCC
TTGATCACAATGCGCATAAAGATTGTTTCAAGTTTTATGACAGTATAAT
| ProSiteProfiles |
FN3_dom (IPR003961) - T[1-48] 7.219 - T[50-137] 11.819 - T[138-228] 15.882 - T[309-390] 7.78 |
| Gene3D |
Ig-like_fold (IPR013783) - T[48-139] 1.7E-11 - T[140-228] 4.4E-12 - T[306-388] 6.1E-6 |
| SUPERFAMILY |
FN3_sf (IPR036116) - T[50-214] 2.69E-22 - T[250-375] 1.52E-7 |
| SMART |
FN3_dom (IPR003961) - T[51-128] 1.9E-7 - T[139-213] 3.0E-8 - T[223-295] 0.75 - T[307-376] 0.15 |
| CDD |
FN3_dom (IPR003961) - T[51-138] 1.07493E-9 - T[139-213] 1.12827E-7 |
| Pfam |
FN3_dom (IPR003961) - T[55-122] 1.3E-9 - T[143-213] 1.3E-6 |
| SUPERFAMILY |
SEA_dom_sf (IPR036364) - T[381-477] 3.14E-6 |
| ProSiteProfiles |
SEA_dom (IPR000082) - T[388-513] 12.003 |
| Gene3D |
SEA_dom_sf (IPR036364) - T[389-448] 3.7E-6 |
| Pfam |
SEA_dom (IPR000082) - T[391-466] 2.7E-6 |
| SMART |
EGF-like_Ca-bd_dom (IPR001881) - T[491-538] 5.4E-6 |
| ProSitePatterns |
EGF_Ca-bd_CS (IPR018097) - T[491-517] . |
| ProSiteProfiles |
EGF-like_dom (IPR000742) - T[491-529] 13.541 |
| Pfam |
EGF_dom (IPR024731) - T[495-529] 8.1E-8 |
| ProSitePatterns |
EGF-type_Asp/Asn_hydroxyl_site (IPR000152) - T[508-519] . |
| Protein Name | Identity | Bit Score | e-value |
|---|