- Transcript 'Phmamm.CG.MTP2014.S4...' >
- Transcript 'KH2012:KH.C1.1124.v1...' >
- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chrUn.g38026.01.t
Possible name(s)
SNAI1; SNAI2; SNAI3
Gene model
Location
chrUn [249,708,666 / 249,711,548]
Amino acid sequence
Length: 229
>Boschl.CG.Botznik2013.chrUn.g38026.01.p
MHIRTHTLPCKCHICGKAFSRTWLLQGHIRTHTGEKPYQCTVCSRAFADRSNLRAHMQTH
ESVKRYACTSCDKTFSRISLLNRHQSTLPIILAVKAVKEDESPKRRKFRRPPKNGGDILL
EENVWAVIMDQRIAIILALVISQTHGTLVETGFSVKAPREYMVCKPIRDVFSATKTDNDG
SYPVLQGPEGKPGPMGKSGLPGPRGEPDYSNINKIVTEHVDSLTSKRIS
Nucleotide sequence
Length: 690
>Boschl.CG.Botznik2013.chrUn.g38026.01.t
TGCATATACGAACGCACACGCTCCCTTGCAAGTGCCATATTTGTGGAAAGGCCTTTTCAA
GAACCTGGCTTCTTCAAGGACACATCAGAACCCATACCGGCGAAAAACCATATCAATGTA
CTGTATGTTCAAGAGCATTTGCTGACCGCTCTAACCTTCGGGCGCACATGCAAACTCACG
AAAGTGTGAAGCGATATGCGTGCACGTCATGCGACAAAACCTTTTCGAGAATATCCCTTC
TCAATCGACATCAAGCGACCCTGCCCATTATCCTAGCTGTAAAAGCTGTAAAGGAGGATG
AATCACCGAAAAGGAGGAAATTTAGGCGTCCTCCGAAAAATGGAGGAGATATCCTCCTGG
AGGAGAACGTATGGGCAGTAATAATGGATCAGAGAATAGCTATAATATTAGCTCTCGTGA
TATCGCAGACTCACGGCACTCTCGTAGAGACAGGCTTCTCCGTTAAAGCACCAAGAGAGT
ACATGGTGTGTAAACCGATACGCGATGTGTTCAGCGCCACGAAGACAGACAACGACGGGT
CGTATCCGGTTCTTCAAGGCCCGGAAGGAAAACCGGGTCCTATGGGAAAATCCGGATTGC
CAGGCCCTAGAGGCGAACCCGATTACAGCAATATAAATAAAATTGTAACGGAGCACGTGG
ATAGTTTAACCAGTAAGCGAATCTCTTAAC
| SUPERFAMILY |
Znf_C2H2_sf (IPR036236) - T[9-60] 1.28E-17 - T[51-87] 7.38E-9 |
| ProSiteProfiles |
Znf_C2H2_type (IPR013087) - T[10-37] 15.022 - T[38-65] 13.09 - T[66-87] 9.743 |
| ProSitePatterns |
Znf_C2H2_type (IPR013087) - T[10-32] . - T[40-60] . |
| SMART |
Znf_C2H2_type (IPR013087) - T[10-32] 0.032 - T[38-60] 3.5E-5 - T[66-86] 28.0 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SNAI1_HUMAN | 72.414 % | 147 | 1.5E-43 |
| SNAI3_HUMAN | 75.862 % | 147 | 1.77E-43 |
| SNAI2_HUMAN | 74.713 % | 148 | 6.11E-44 |